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berkeley_reactor_200306_planktonic_scaffold_253396

Search features with annotation key words

Displaying items 121-150 of 151 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_253396_121
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

139618..140607
DNA (990bp) protein (330aa)
Radical SAM domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGA0_9BACT
Radical SAM domain protein {ECO:0000313|EMBL:EEF61262.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
radical SAM protein
berkeley_reactor_200306_planktonic_scaffold_253396_122
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

140666..141862
DNA (1197bp) protein (399aa)
fabF; 3-oxoacyl-ACP synthase (EC:2.3.1.41)
Beta-ketoacyl synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGA3_9BACT
Beta-ketoacyl synthase {ECO:0000313|EMBL:EEF61265.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_253396_123
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

141859..142860
DNA (1002bp) protein (334aa)
Beta-ketoacyl synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGA4_9BACT
Beta-ketoacyl synthase {ECO:0000313|EMBL:EEF61266.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_253396_124
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

142857..143588
DNA (732bp) protein (244aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGA5_9BACT
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EEF61267.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
3-oxoacyl-(acyl-carrier-protein) reductase
berkeley_reactor_200306_planktonic_scaffold_253396_125
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

143588..143860
DNA (273bp) protein (91aa)
Acyl carrier protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGA6_9BACT
Acyl carrier protein {ECO:0000313|EMBL:EEF61268.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
acyl-carrier protein-like protein
berkeley_reactor_200306_planktonic_scaffold_253396_126
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

144560..145243
DNA (684bp) protein (228aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKC81570.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
Uncharacterized protein id=2223918 bin=GWB2_Geobacter-like_52_12 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
berkeley_reactor_200306_planktonic_scaffold_253396_127
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(145629..146213)
DNA (585bp) protein (195aa)
Putative uncharacterized protein id=3025038 bin=GWF2_Lentisphaerae_50_93 species=Candidatus Accumulibacter phosphatis genus=Candidatus Accumulibacter taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
hypothetical protein
Tax=GWF2_Lentisphaerae_50_93_curated
berkeley_reactor_200306_planktonic_scaffold_253396_128
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(146210..147739)
DNA (1530bp) protein (510aa)
Mammalian cell entry related domain protein id=3025040 bin=GWF2_Lentisphaerae_50_93 species=Burkholderia phymatum genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
mce related family protein
Tax=GWF2_Lentisphaerae_50_93_curated
berkeley_reactor_200306_planktonic_scaffold_253396_129
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

comp(147732..148385)
DNA (654bp) protein (218aa)
Paraquat-inducible protein A id=3368733 bin=GWF2_Lentisphaerae_49_21 species=Candidatus Accumulibacter phosphatis genus=Candidatus Accumulibacter taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
Paraquat-inducible protein A
Tax=GWF2_Lentisphaerae_49_21_curated
berkeley_reactor_200306_planktonic_scaffold_253396_130
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(148382..149083)
DNA (702bp) protein (234aa)
Paraquat-inducible protein A id=3025044 bin=GWF2_Lentisphaerae_50_93 species=Candidatus Accumulibacter phosphatis genus=Candidatus Accumulibacter taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
Paraquat-inducible protein A
Tax=GWF2_Lentisphaerae_50_93_curated
berkeley_reactor_200306_planktonic_scaffold_253396_131
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(149164..150456)
DNA (1293bp) protein (431aa)
anaerobic sulfatase maturase n=1 Tax=Vibrio rumoiensis RepID=UPI0002E14E79
radical SAM protein
Radical SAM protein {ECO:0000313|EMBL:BAO28331.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
berkeley_reactor_200306_planktonic_scaffold_253396_132
Alcanivorax sp. DG881, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(150560..151996)
DNA (1437bp) protein (479aa)
Putative uncharacterized protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X2S1_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:EDX90264.1}; TaxID=236097 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax sp. DG881.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_253396_133
Methylomicrobium album, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(152012..153562)
DNA (1551bp) protein (517aa)
Uncharacterized protein n=1 Tax=Methylomicrobium album BG8 RepID=H8GG26_METAL
Uncharacterized protein {ECO:0000313|EMBL:EIC29950.1}; TaxID=686340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium album BG8.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_253396_134
unknown

Not on your lists

comp(153640..154257)
DNA (618bp) protein (206aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_253396_135
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(154401..155903)
DNA (1503bp) protein (501aa)
Sulfatase n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2R917_PIRSD
sulfatase
Sulfatase {ECO:0000313|EMBL:ADB15844.1}; Flags: Precursor;; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
berkeley_reactor_200306_planktonic_scaffold_253396_136
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

156301..156540
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVI2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY21424.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_253396_trna_1
unknown

Not on your lists

157284..157370
DNA (87bp)
transferRNA Ser
berkeley_reactor_200306_planktonic_scaffold_253396_137
R_RIF_OD1_09_47_33b, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

comp(157341..158843)
DNA (1503bp) protein (501aa)
Site-specific recombinase n=1 Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2S8I3_HAHCH
site-specific recombinase
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_09_47_33b_curated
berkeley_reactor_200306_planktonic_scaffold_253396_138
unknown

Not on your lists

158923..159156
DNA (234bp) protein (78aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_253396_139
BJP_IG2102_BRC1_58_13, BRC1, Bacteria

Not on your lists

comp(159157..162228)
DNA (3072bp) protein (1024aa)
Predicted ATPase id=1879617 bin=GWE2_Bacteroidetes_42_39 species=Hahella chejuensis genus=Hahella taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE2_Bacteroidetes_42_39 organism_group=Bacteroidetes organism_desc=Good +
ATPase
Tax=BJP_IG2102_BRC1_58_13
berkeley_reactor_200306_planktonic_scaffold_253396_140
BJP_IG2102_BRC1_58_13, BRC1, Bacteria

Not on your lists

comp(162373..163134)
DNA (762bp) protein (254aa)
Tax=BJP_IG2102_BRC1_58_13
berkeley_reactor_200306_planktonic_scaffold_253396_141
unknown

Not on your lists

163158..165026
DNA (1869bp) protein (623aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_253396_142
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

165386..165736
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GR64_9BURK
Gp49-like PF05973 family protein {ECO:0000313|EMBL:KHD06006.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
Gp49-like PF05973 family protein
berkeley_reactor_200306_planktonic_scaffold_253396_143
Desulfovibrio sp. X2, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

165733..166026
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. X2 RepID=S7TYL5_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EPR42152.1}; TaxID=941449 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. X2.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_253396_144
R_RIF_OD1_11_51_15, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(166076..166540)
DNA (465bp) protein (155aa)
DNA repair protein RadC n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSW5_9BACT
radC; DNA repair protein RadC
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_11_51_15_curated
berkeley_reactor_200306_planktonic_scaffold_253396_145
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(166533..167393)
DNA (861bp) protein (287aa)
Putative uncharacterized protein n=1 Tax=Geobacter sp. (strain M18) RepID=E8WU00_GEOS8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADW14335.1}; TaxID=443143 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M18).;"
berkeley_reactor_200306_planktonic_scaffold_253396_146
unknown

Not on your lists

comp(167650..167979)
DNA (330bp) protein (110aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_253396_147
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(168126..168410)
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Paenibacillus polymyxa RepID=UPI000360B101
Uncharacterized protein {ECO:0000313|EMBL:EDL62279.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
plasmid-like protein
berkeley_reactor_200306_planktonic_scaffold_253396_148
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(168407..168733)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MGM7_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA43555.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus DSM 5350.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_253396_149
R_RIF_OD1_11_51_15, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(168730..169800)
DNA (1071bp) protein (357aa)
DNA primase n=2 Tax=Clostridium kluyveri RepID=A5N6R1_CLOK5
dnaG; DNA primase
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_11_51_15_curated
Displaying items 121-150 of 151 in total

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