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berkeley_reactor_200306_planktonic_scaffold_23420_70

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(77756..79417)

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS18_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 62.1
  • Coverage: 551.0
  • Bit_score: 684
  • Evalue 4.70e-194
Pseudouridine synthase {ECO:0000313|EMBL:EEF57350.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 62.1
  • Coverage: 551.0
  • Bit_score: 684
  • Evalue 6.60e-194
hypothetical protein similarity KEGG
DB: KEGG
  • Identity: 32.4
  • Coverage: 605.0
  • Bit_score: 252
  • Evalue 2.20e-64

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1662
ATGATTCCGTGCGTCATTTTTGAGGACGAGCACCTGCTGGCGGTTCACAAGCCCGCCGGCTGGAACACGCACGCGCCGTCGCCTTACGCGAGCGAAGGCATTTATGAGTGGCTCCGTCATCGCGAGCCCCGCTGGGCGCCACTCGCGATCATTCATCGGCTGGACAAGGAAACCAGCGGCATCCTGGTTTTCAGCAAGACCGCGCCCGCCAACAAGTCGCTCACGGAACAATTCACGCAGCGCCGCGTTCACAAGACGTATCAGCTGTTCACGGACCGCGCCATTCCGCAAAAAAAGGCCTTCGCCGTCAAAACCAGCCTGCTTCGTATCGGTGACAAATATGCGAGCCGGCCGGGCGGGGAACCGGCTGAAACCAAATTCACGCCGATTCTCGATGCGAAATCCGCCATCAATAACGCCGGACTCACAATGGTGACAGCCGAACCCCTCACCGGCCGCACCCATCAAATCCGCGTTCACGCGGCGGAAAGCGGCTTTCCCATTCTCGGCGACACCCTTTACGGCGGCACCGCGGCGGCGCGCGTTTATTTGCACGCGGGCGAAATCGCGTTCAAACATCCCGTCACCGGCGCACCGGTGAAACTGGTTGCGCCGGTGGCTTTCGACCAGGAACCGCGGCTTGCCTTGCGCCGCGCCATCATCGAGCCAACCGACACCAATGCGTTTCGCTTGATTCACGGCGCGAGCGACGGCTGGCCCGGCTGGCAGGTGGAAAAATTCGGCGATTTTATCCTGTCGCAATCCGAAACACAGCTAAACGACCCGCAGAACTCCGAGTTGACGCGCCTTGCAAAAATTTTCGGCGCGCACGGTGCCTATCACAAAATCCTTTCGCGCCAGGTCCGCCGCACGACCACCGCCGAAGCCTCGCCGCAGTTGGTTTGGGGCGAACCCGCGCCGGAACGCTTTGAAATCCGGGAAAACGGCGTCCGGTTTGAAATGAGTTTCCATGAGGGATATTCCGTCGGCCTGTTCCTCGATCAACGCGACAACCGGCGGCGTTTTTTGACCGGCCAGGTTGCGGCTGGTTTTCCGCTTCACGGAGAACCGGCGTCCCGCCTGCCTCAAACTTCTGCAAAAGACGTTTCAAAAACGAATGGAGACAGGCGCGACGCCTGTCCCACGATGTTAAACACCTTTGCCTACACCTGCGGTTTTTCCGTGTGCGCGGCCAAAGCCGGCTGGCAGACGACCAGCCTGGATCTTTCGAAAAAATATCTGGAATGGGGCAAACGCAATTTCGCCCGCAACGGCCTGGCTTCGGAAGCCCACGATTTTATCTACGGCGACACCTTCGACTGGCTGCGGCGGCTGGCGAAGAAGGGCCGTTCGTTCGACGCCATCGTGCTTGATCCGCCGACCTTTTCGCAGTCCAGGGAATCCGGGGCTTTCCGGGTGGAAAAAGATTTTGGAAAGCTCGTCAGCGCCGCCCTGCCCGTTTTGAAACCCGGGGGGATTCTGCTGGCCTCCACCAACGCCGCCGACTGGGCGCCGGAGAAATTTCTCGCCAGCGTGACCGCCGCCGCCCGCGACGCCAAACGCAAAATCGTCAACCAGCACTACGTTCCCCAACCACCGGACTTCCCCGTCAGCCGCGCCGAACCGGCGTATTTGAAAACGGTGTGGCTGGCGCTGCATTGA
PROTEIN sequence
Length: 554
MIPCVIFEDEHLLAVHKPAGWNTHAPSPYASEGIYEWLRHREPRWAPLAIIHRLDKETSGILVFSKTAPANKSLTEQFTQRRVHKTYQLFTDRAIPQKKAFAVKTSLLRIGDKYASRPGGEPAETKFTPILDAKSAINNAGLTMVTAEPLTGRTHQIRVHAAESGFPILGDTLYGGTAAARVYLHAGEIAFKHPVTGAPVKLVAPVAFDQEPRLALRRAIIEPTDTNAFRLIHGASDGWPGWQVEKFGDFILSQSETQLNDPQNSELTRLAKIFGAHGAYHKILSRQVRRTTTAEASPQLVWGEPAPERFEIRENGVRFEMSFHEGYSVGLFLDQRDNRRRFLTGQVAAGFPLHGEPASRLPQTSAKDVSKTNGDRRDACPTMLNTFAYTCGFSVCAAKAGWQTTSLDLSKKYLEWGKRNFARNGLASEAHDFIYGDTFDWLRRLAKKGRSFDAIVLDPPTFSQSRESGAFRVEKDFGKLVSAALPVLKPGGILLASTNAADWAPEKFLASVTAAARDAKRKIVNQHYVPQPPDFPVSRAEPAYLKTVWLALH*