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berkeley_reactor_200306_planktonic_scaffold_23420_102

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 108177..109037

Top 3 Functional Annotations

Value Algorithm Source
Xylose isomerase domain protein TIM barrel n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMC8_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 59.8
  • Coverage: 286.0
  • Bit_score: 359
  • Evalue 2.40e-96
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:EEF58970.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 59.8
  • Coverage: 286.0
  • Bit_score: 359
  • Evalue 3.30e-96
xylose isomerase domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 43.9
  • Coverage: 280.0
  • Bit_score: 228
  • Evalue 1.40e-57

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 861
ATGCTGAACGAAATTCGCGGGCTCGGCTTTGAATACGCCGAGTTGAGCCACGGCATTCGCCTGAGCCTGTTGCCGGGCATTTTGGAGGCGGTGAGCGCGGGCGAAATCAAAATTTCCAGCCTGCACAATTTCTGCCCGCTGCCGCTCGGCGTCGAGTCGCCGGCGCCGAACCTGTATAAATTCACCGCCGAACGTTCGCGCGAACTTGAGCTGGCCATCAAGCACACGCTCAAGACGTTTGATTTCGCCGTGCGCGTCAAGGCGCCGCTCGTGGTGTTGCATCTGGGCAGCATGGAGCTGAAAGATTACGGCGGCAAACTGGAGGCCATGCTCGAACGCGGCGAACGGCAGTCGCCCAAGTATGAAAAACTGCTCGCCGAAGCCGTCAAGAAACGCGAGGCCGGCAAAAAGCGGGCGATGAAACGGCTTTATGAAACCCTGAAAATCCTCGTGCCCGAGGCCGAGAAACGCGGGCTCATTCTGGGCTGCGAAAATCGGGAGGGCGTGGAGGAAACGCCGGTGGACGGGGATTTTGAAAATTTCCTCCGCGACTTCGACAGCCCGAACATTGCGTATTGGCATGATTGCGGACACGGCCAGATCAAGGAAAACCTCGGTTTTCTCAAGGTGACGGAACATCTCGAACCGCTGACCACGCGGCTGGCGGGATTCCACATTCACGACGTGCAGTATCCCGGTCGCGATCATTGTCCGCCCGGCAGCGGCATGATTGACTTTGCCGCCTTGAAACCGTTCGTCCTGCCCGATCACATCAAGGTGTTTGAACTCAGTCCCCGCGTGCCGGTGGAAGATGCCAAACGCGGGATCGCGCACCTCAAAGCGATTTGGGGCGACGAATAA
PROTEIN sequence
Length: 287
MLNEIRGLGFEYAELSHGIRLSLLPGILEAVSAGEIKISSLHNFCPLPLGVESPAPNLYKFTAERSRELELAIKHTLKTFDFAVRVKAPLVVLHLGSMELKDYGGKLEAMLERGERQSPKYEKLLAEAVKKREAGKKRAMKRLYETLKILVPEAEKRGLILGCENREGVEETPVDGDFENFLRDFDSPNIAYWHDCGHGQIKENLGFLKVTEHLEPLTTRLAGFHIHDVQYPGRDHCPPGSGMIDFAALKPFVLPDHIKVFELSPRVPVEDAKRGIAHLKAIWGDE*