ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_37596_32

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(36119..37624)

Top 3 Functional Annotations

Value Algorithm Source
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 77.3
  • Coverage: 490.0
  • Bit_score: 776
  • Evalue 2.00e-221
Lysine--tRNA ligase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAA4_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 77.3
  • Coverage: 490.0
  • Bit_score: 776
  • Evalue 1.40e-221
lysyl-tRNA synthetase similarity KEGG
DB: KEGG
  • Identity: 53.4
  • Coverage: 502.0
  • Bit_score: 518
  • Evalue 2.00e-144

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1506
ATGGAAGCCAAACCGACGATTCCGAACCCGGCCAAGCCCGTGGACGAAAATTCGCTCATCAAGCAGCGCCGCGAAAAACTCGACGCCCTGCGCGCCAAAGGCATTGACCCGTTCCAGAACAAATTCACGCCTGACACGCAATGCAACGCCGCCCGTAGCGACTTTGAATCCGGCGCGCTGCCCGAAGGCGCCAAAGTCGCCGTCGCCGGCCGCATCACCGCGCATCGCGACATGGGCAAATCCATGTTTATTGACGTGCGCGACCAGAGCGGGCGCATTCAGGTTTACGCGCAGAAAAACGTCCTTGGCGATGAGCAATTCAATATCTTCGCGCACCTTGACCTCGGCGATTTTGTCGGCGTCACCGGCACGCTCTTCCGCACCAAGACCGGCGAACCGAGCATCAAGCTCGAATCCTTCGTGATTTTGTCGAAAGCCCTGCGTCCGCCGCCCGGCAAATGGCACGGCCTGGAAGACACGGAAATCCGCTATCGTCAGCGTTATCTCGATCTCATTTCCAATCCCGACGTGAAGGACGTGATGCTCAAGCGCAGCGCCATTGTCCGCGAAATCCGCAATTTCTTTCACGACCGCGGCTACGTGGAAGTCGAGACGCCCGTGATGCAGGCCATTCCCGGCGGCGCGGCGGCGGCGCCGTTCATCACCAAGCACAACGCGCTCGGTTGCGACTTTTATCTGCGCATTGCGCTGGAACTTTACCACAAGCGCCTGCTCGTCGGCGGCGTGGACAAGCTGTTCGAGATCGGCAAGAACTTCCGCAACGAAGGCCTCTCGCGCCGGCACAATCCCGAGTTCACGATGCTCGAAGCGTATCAGGCGTTCGGCGATTACGAGACGATGATGGAAACGGTGGAATCGCTCATCAAGCACATCGCGCAGAAAGTCCTCGGCACATTCGTCATCGAATTCAAAGATGCCGAAGGTAAAGTCACTCGCACCATTGATCTCACGACATGGAAACGCGCCAAATACAAAGACCTTGTCCGTGCCGTCGCCGGTCAGGATTGGTTTGACGTCACGCCCGAGGAACGTCGCCGTCGCGCAATGGAAGACTTGAAACTTGCGGGCGACATCGCCAAGGGCTACGAAGATTTTGAAGTTACCGGCGCGGTGTTTGAAAAGCTGGTGGAGCCGACGCTCATCCAGCCGACGTTCGTCACGCATCTGCCCAAGGAGCTCGTGCCGCTCGCCAAGCTCACGCCCGACGACCCGACGACCGTCGAGGTGTTCGAGTGCTGCATCAACGGTCAGGAAATTTCTCCCGGCTACACCGAGCAAAACGATCCGATCACACAGCGCGCCGCGCTGGAACATCAGGCTGGCGGCGAGCAGCAGAAGCTGGACGAAGATTTCCTCGTCGCGCTTGAACACGGCATGCCGCCCGCCGGCGGCATCGGCATCGGCATTGACCGTCTTTGCATGATGCTCCTGGGTCAGGAAAGCATCCGCGACGTGATCCTGTTCCCGCAGTTGAAGCCGAAATGA
PROTEIN sequence
Length: 502
MEAKPTIPNPAKPVDENSLIKQRREKLDALRAKGIDPFQNKFTPDTQCNAARSDFESGALPEGAKVAVAGRITAHRDMGKSMFIDVRDQSGRIQVYAQKNVLGDEQFNIFAHLDLGDFVGVTGTLFRTKTGEPSIKLESFVILSKALRPPPGKWHGLEDTEIRYRQRYLDLISNPDVKDVMLKRSAIVREIRNFFHDRGYVEVETPVMQAIPGGAAAAPFITKHNALGCDFYLRIALELYHKRLLVGGVDKLFEIGKNFRNEGLSRRHNPEFTMLEAYQAFGDYETMMETVESLIKHIAQKVLGTFVIEFKDAEGKVTRTIDLTTWKRAKYKDLVRAVAGQDWFDVTPEERRRRAMEDLKLAGDIAKGYEDFEVTGAVFEKLVEPTLIQPTFVTHLPKELVPLAKLTPDDPTTVEVFECCINGQEISPGYTEQNDPITQRAALEHQAGGEQQKLDEDFLVALEHGMPPAGGIGIGIDRLCMMLLGQESIRDVILFPQLKPK*