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berkeley_reactor_200306_planktonic_scaffold_78559_48

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(50769..51329)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma70 factor n=1 Tax=Streptomyces sp. ScaeMP-e10 RepID=UPI0003627172 similarity UNIREF
DB: UNIREF100
  • Identity: 40.5
  • Coverage: 163.0
  • Bit_score: 105
  • Evalue 3.10e-20
Marine sediment metagenome DNA, contig: S01H1_L01884 {ECO:0000313|EMBL:GAF85437.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 37.1
  • Coverage: 175.0
  • Bit_score: 107
  • Evalue 1.10e-20
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 37.0
  • Coverage: 162.0
  • Bit_score: 105
  • Evalue 1.50e-20

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Taxonomy

marine sediment metagenome

Sequences

DNA sequence
Length: 561
ATGAACGAACCGGTTGCCGAACCGCGGCTTGAGGAAAAAGCCCCGGGTGAATGGCCTGCCGCCGAGTTGGGCGCGCTTTACGACGAGCACAGCCGCGCGATTTATTACCTCGCGCTCCGCTTTTTGGGTGATCCGCAAAAGGCCGAAGACGCCACGCACGACGTGTTTCTGAAGGCGTTCCGACGTTGGGATCAATTTCGCGGCGACGCCTCGGTGCGCACCTGGCTGTATCGCATCACCATCAACCATTGCCAGAATCTCTGCCAGTCCTGGCACCACCGCCACATTCATCCGGGGTCCGACGATGCCGTCTGGGAAAATGCGCCGGCCAAAACGGATTCGCCCTTGCGCGTGCTGGAAACCAAGGAGCTCGGCCAGCGCATCCAGAAAACCCTCGACGCCTTGTCCGAAGAATACCGGCTGCTGTTGCTCCTCGTGGCCGACGAGGAATTGAGTTACGAGGAAATCGCCGCGCTGGTCGGCCAGACCACCGACGCGGTTCGCGGCAAGCTGCATCGCGCGCGCAAAGCCTTTGCCGCGTATTTTGAAAAGACGAACTGA
PROTEIN sequence
Length: 187
MNEPVAEPRLEEKAPGEWPAAELGALYDEHSRAIYYLALRFLGDPQKAEDATHDVFLKAFRRWDQFRGDASVRTWLYRITINHCQNLCQSWHHRHIHPGSDDAVWENAPAKTDSPLRVLETKELGQRIQKTLDALSEEYRLLLLLVADEELSYEEIAALVGQTTDAVRGKLHRARKAFAAYFEKTN*