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berkeley_reactor_200306_planktonic_scaffold_89890_135

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(168516..169160)

Top 3 Functional Annotations

Value Algorithm Source
NusG antitermination factor id=3820543 bin=GWF2_Lentisphaerae_52_8 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae similarity UNIREF
DB: UNIREF100
  • Identity: 56.8
  • Coverage: 206.0
  • Bit_score: 228
  • Evalue 3.60e-57
NusG antitermination factor {ECO:0000313|EMBL:EEF63150.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 46.7
  • Coverage: 167.0
  • Bit_score: 144
  • Evalue 9.60e-32
nusG; transcriptional activator RfaH, NusG family similarity KEGG
DB: KEGG
  • Identity: 34.6
  • Coverage: 159.0
  • Bit_score: 106
  • Evalue 7.60e-21

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 645
GTGGCATTGGTTGAACGTTTAAGACCGGACGAAAAACAAGGTTGCCTTTTACTTAACCCTTTGCATCGAATGCAGCCAGATCTTCCAGCATGGTATTGCGCCCGCACCAAGGTGAAACACGAGCATATCGCGGCGGCGAACCTCAGCCGGAACCTTCATCTGGAGGTGTTCAATCCCAGGCTTCGCGTGGAGCGGATTGCCCAGCGCGGCGTGATGCGGGTGATCGAACCGCTTTTTCCCTGTTACATTTTCATTCATTGCGTGTTGCTGGAAAGTCTGGACGCCATTCAGCACACGAACGGCATCAACGGCCTGGTGCGATTTGGCGGGGAGGCACCGTCGGTGCCGGATTCGGTGATCGAAGAGCTGGAGGAATGTTTCCTCGGCGATGATCCGATGCCCGTGAAGAGCCAGCTTGCGCCGGGCGACAAGGTTACCCTGCGCGACGGCGCCTTCTCGGAAAGCCAGGCGTTTGTGTTGCGGGTGATGCCGGCACGAAGGCGGGTTCAGGTGTTACTGGATATTCTGGGACGGCCCACCCCGGTGGAGGTGGACCGGGAATCGGTGTTGTTGGAAAGGTCATTGGCGGAACTGGCGCCCATCCTGGCCGCGACGCGGCGGGATGAGGGTTTGGCCCTGACGTGA
PROTEIN sequence
Length: 215
VALVERLRPDEKQGCLLLNPLHRMQPDLPAWYCARTKVKHEHIAAANLSRNLHLEVFNPRLRVERIAQRGVMRVIEPLFPCYIFIHCVLLESLDAIQHTNGINGLVRFGGEAPSVPDSVIEELEECFLGDDPMPVKSQLAPGDKVTLRDGAFSESQAFVLRVMPARRRVQVLLDILGRPTPVEVDRESVLLERSLAELAPILAATRRDEGLALT*