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berkeley_reactor_200306_planktonic_scaffold_89890

Search features with annotation key words

Displaying items 1-30 of 144 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_89890_1
RifOxyA12_full_Proteobacteria_58_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(131..484)
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174434D
hypothetical protein
Tax=RifOxyA12_full_Proteobacteria_58_15_curated
berkeley_reactor_200306_planktonic_scaffold_89890_2
unknown

Not on your lists

comp(444..536)
DNA (93bp) protein (31aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_89890_3
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(553..1080)
DNA (528bp) protein (176aa)
ACT domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JJ19_9BACT
ACT domain protein {ECO:0000313|EMBL:EDY81744.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
amino acid-binding ACT domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_89890_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(1109..1513)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRU3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57454.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_89890_5
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1613..3058)
DNA (1446bp) protein (482aa)
Oxidoreductase {ECO:0000313|EMBL:KGF80206.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
Oxidoreductase domain protein id=4669090 bin=GWF2_Bacteroidetes_42_66 species=Pedobacter heparinus genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_42_66 organism_group=Bacteroidetes organism_desc=a73
oxidoreductase domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_89890_6
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(3098..4567)
DNA (1470bp) protein (490aa)
Putative uncharacterized protein id=4670245 bin=GWC2_Ignavibacteria_38_9 species=Dysgonomonas gadei genus=Dysgonomonas taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria
hypothetical protein
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
berkeley_reactor_200306_planktonic_scaffold_89890_7
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

4787..5494
DNA (708bp) protein (236aa)
Transcriptional regulator, AraC family n=1 Tax=Rhodopirellula sallentina SM41 RepID=M5U9P6_9PLAN
transcriptional regulator
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
berkeley_reactor_200306_planktonic_scaffold_89890_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

5805..6686
DNA (882bp) protein (294aa)
Acetylglutamate kinase {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.8 {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245383};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000256|HAMAP-Rule:MF_00082}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Acetylglutamate kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQ47_9BACT
acetylglutamate kinase
berkeley_reactor_200306_planktonic_scaffold_89890_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

6758..8035
DNA (1278bp) protein (426aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Acetylornithine aminotransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQ48_9BACT
acetylornithine and succinylornithine aminotransferase
berkeley_reactor_200306_planktonic_scaffold_89890_10
unknown

Not on your lists

8096..8542
DNA (447bp) protein (149aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_89890_11
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

8539..9159
DNA (621bp) protein (207aa)
DNA-3-methyladenine glycosylase II {ECO:0000313|EMBL:EDY20532.1}; EC=3.2.2.21 {ECO:0000313|EMBL:EDY20532.1};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
alkA; DNA-3-methyladenine glycosylase (EC:3.2.2.21)
DNA-3-methyladenine glycosylase II n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYJ1_9BACT
berkeley_reactor_200306_planktonic_scaffold_89890_12
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(9247..10731)
DNA (1485bp) protein (495aa)
glucosylceramidase (EC:3.2.1.45)
Glucosylceramidase {ECO:0000313|EMBL:ACB74572.1}; EC=3.2.1.45 {ECO:0000313|EMBL:ACB74572.1};; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Glucosylceramidase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZR85_OPITP
berkeley_reactor_200306_planktonic_scaffold_89890_13
Bacteroides sp. CAG:189, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11079..13424)
DNA (2346bp) protein (782aa)
hypothetical protein n=1 Tax=Lewinella persica RepID=UPI0003758163
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCY52048.1}; TaxID=1262737 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:189.;"
berkeley_reactor_200306_planktonic_scaffold_89890_14
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13497..15986)
DNA (2490bp) protein (830aa)
Glycoside hydrolase family 30 protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q09DH4_STIAD
glycoside hydrolase
Glycoside hydrolase family 30 protein {ECO:0000313|EMBL:ADO69338.1}; Putative glycosyl hydrolase {ECO:0000313|EMBL:EAU69814.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
berkeley_reactor_200306_planktonic_scaffold_89890_15
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(15953..16789)
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQF9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57884.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_89890_16
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(16892..19558)
DNA (2667bp) protein (889aa)
Uncharacterized protein (Fragment) n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQF8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57883.1}; Flags: Fragment;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_89890_17
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

19761..22022
DNA (2262bp) protein (754aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZR83_OPITP
integral membrane sensor signal transduction histidine kinase
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:ACB74570.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_89890_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

22019..22669
DNA (651bp) protein (217aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAM6_9BACT
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EEF63061.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
two component LuxR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_89890_19
BJP_08E140C01_Flavobacteriales_35_8, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22854..24605)
DNA (1752bp) protein (584aa)
glycoside hydrolase
Glycoside hydrolase family 5 id=4309579 bin=GWC2_Bacteroidetes_40_13 species=Paenibacillus lactis genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Bacteroidetes_40_13 organism_group=Bacteroidetes
Tax=BJP_08E140C01_Flavobacteriales_35_8
berkeley_reactor_200306_planktonic_scaffold_89890_20
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

24724..26496
DNA (1773bp) protein (591aa)
Ribonuclease BN n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XR08_9BACT
Ribonuclease BN {ECO:0000313|EMBL:EEF57704.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_89890_21
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

27007..28791
DNA (1785bp) protein (595aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XN67_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58729.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_89890_22
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

28788..29618
DNA (831bp) protein (277aa)
TPR repeat-containing protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XN68_9BACT
TPR repeat-containing protein {ECO:0000313|EMBL:EEF58730.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_89890_23
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

29874..30863
DNA (990bp) protein (330aa)
ATPase associated with various cellular activities AAA_3 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFC7_9BACT
ATPase associated with various cellular activities AAA_3 {ECO:0000313|EMBL:EEF61291.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ATPase associated with various cellular activities AAA_3
berkeley_reactor_200306_planktonic_scaffold_89890_24
RBG_13_Chloroflexi_46_14_curated, Chloroflexi, Bacteria

Not on your lists

30886..31896
DNA (1011bp) protein (337aa)
hypothetical protein n=1 Tax=Burkholderia kururiensis RepID=UPI00034CD592
Leucine Rich Repeat (LRR)-containing protein
Tax=RBG_13_Chloroflexi_46_14_curated
berkeley_reactor_200306_planktonic_scaffold_89890_25
unknown

Not on your lists

comp(32291..32599)
DNA (309bp) protein (103aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_89890_26
unknown

Not on your lists

comp(32596..32817)
DNA (222bp) protein (74aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_89890_27
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

32856..33836
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFC8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61292.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_89890_28
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

34019..34612
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFC9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61293.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_89890_29
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

34627..35625
DNA (999bp) protein (333aa)
von Willebrand factor type A n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFD0_9BACT
von Willebrand factor type A {ECO:0000313|EMBL:EEF61294.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Mg-chelatase subunit ChlD
berkeley_reactor_200306_planktonic_scaffold_89890_30
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

35622..37322
DNA (1701bp) protein (567aa)
von Willebrand factor type A n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFD1_9BACT
von Willebrand factor type A {ECO:0000313|EMBL:EEF61295.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Mg-chelatase subunit ChlD
Displaying items 1-30 of 144 in total

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