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berkeley_reactor_200306_planktonic_scaffold_89890

Search features with annotation key words

Displaying items 121-144 of 144 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_89890_120
RBG_16_RIF03_38_10_curated, RIF03, Bacteria

Not on your lists

comp(149212..150618)
DNA (1407bp) protein (469aa)
O-antigen polymerase id=1750053 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
O-antigen polymerase
Tax=RBG_16_RIF03_38_10_curated
berkeley_reactor_200306_planktonic_scaffold_89890_121
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(150733..152019)
DNA (1287bp) protein (429aa)
Uncharacterized protein {ECO:0000313|EMBL:KDB51116.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
Glycosyl transferase, family I id=4955704 bin=GWC2_Planctomycete_KSU_39_26 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
group 1 glycosyl transferase
berkeley_reactor_200306_planktonic_scaffold_89890_122
RBG_19FT_COMBO_Aminicenantes_58_17_curated, Aminicenantes, Bacteria

Not on your lists

comp(152076..153239)
DNA (1164bp) protein (388aa)
Putative uncharacterized protein n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YJL2_9DELT
oxidoreductase
Tax=RBG_19FT_COMBO_Aminicenantes_58_17_curated
berkeley_reactor_200306_planktonic_scaffold_89890_123
RBG_16_RIF03_38_10_curated, RIF03, Bacteria

Not on your lists

comp(153232..154389)
DNA (1158bp) protein (386aa)
Putative uncharacterized protein n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YJK9_9DELT
NAD-dependent epimerase/dehydratase
Tax=RBG_16_RIF03_38_10_curated
berkeley_reactor_200306_planktonic_scaffold_89890_124
RBG_19FT_COMBO_Aminicenantes_58_17_curated, Aminicenantes, Bacteria

Not on your lists

comp(154588..157296)
DNA (2709bp) protein (903aa)
hypothetical protein id=17311708 bin=RBG_16_Aminicenantes_63_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
Tax=RBG_19FT_COMBO_Aminicenantes_58_17_curated
berkeley_reactor_200306_planktonic_scaffold_89890_125
unknown

Not on your lists

comp(157447..157614)
DNA (168bp) protein (56aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_89890_126
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(157624..158736)
DNA (1113bp) protein (371aa)
Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y732_LEPCP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB33659.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
berkeley_reactor_200306_planktonic_scaffold_89890_127
RBG_19FT_COMBO_Aminicenantes_58_17_curated, Aminicenantes, Bacteria

Not on your lists

comp(158812..159966)
DNA (1155bp) protein (385aa)
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14)
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y726_LEPCP
Tax=RBG_19FT_COMBO_Aminicenantes_58_17_curated
berkeley_reactor_200306_planktonic_scaffold_89890_128
RBG_19FT_COMBO_Aminicenantes_58_17_curated, Aminicenantes, Bacteria

Not on your lists

comp(159966..161975)
DNA (2010bp) protein (670aa)
Glycosyl transferase group 1 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XD20_9BACT
hypothetical protein
Tax=RBG_19FT_COMBO_Aminicenantes_58_17_curated
berkeley_reactor_200306_planktonic_scaffold_89890_129
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(162129..164414)
DNA (2286bp) protein (762aa)
Lipopolysaccharide biosynthesis protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XD19_9BACT
Lipopolysaccharide biosynthesis protein {ECO:0000313|EMBL:EEF62365.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
tyrosine protein kinase
berkeley_reactor_200306_planktonic_scaffold_89890_130
GWF2_Lentisphaerae_52_8_curated, Lentisphaerae, Bacteria

Not on your lists

comp(164462..165583)
DNA (1122bp) protein (374aa)
Putative uncharacterized protein id=3820455 bin=GWF2_Lentisphaerae_52_8 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
hypothetical protein
Tax=GWF2_Lentisphaerae_52_8_curated
berkeley_reactor_200306_planktonic_scaffold_89890_131
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(165590..166090)
DNA (501bp) protein (167aa)
Transferase hexapeptide repeat containing protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XD17_9BACT
Transferase hexapeptide repeat containing protein {ECO:0000313|EMBL:EEF62363.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
transferase
berkeley_reactor_200306_planktonic_scaffold_89890_132
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(166099..167325)
DNA (1227bp) protein (409aa)
Oxidoreductase domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XD16_9BACT
Oxidoreductase domain protein {ECO:0000313|EMBL:EEF62362.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
oxidoreductase domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_89890_133
GWF2_Lentisphaerae_52_8_curated, Lentisphaerae, Bacteria

Not on your lists

comp(167541..168251)
DNA (711bp) protein (237aa)
Sugar transferase id=3820538 bin=GWF2_Lentisphaerae_52_8 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
undecaprenyl-phosphate galactose phosphotransferase
Tax=GWF2_Lentisphaerae_52_8_curated
berkeley_reactor_200306_planktonic_scaffold_89890_134
unknown

Not on your lists

168319..168654
DNA (336bp) protein (112aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_89890_135
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(168516..169160)
DNA (645bp) protein (215aa)
NusG antitermination factor id=3820543 bin=GWF2_Lentisphaerae_52_8 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
NusG antitermination factor {ECO:0000313|EMBL:EEF63150.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
nusG; transcriptional activator RfaH, NusG family
berkeley_reactor_200306_planktonic_scaffold_89890_136
unknown

Not on your lists

comp(169318..169638)
DNA (321bp) protein (107aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_89890_137

Not on your lists

170631..171173
DNA (543bp) protein (181aa)
Fibronectin type III domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XD54_9BACT
Fibronectin type III domain protein {ECO:0000313|EMBL:KKS34983.1}; TaxID=1618926 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_42_12.;"
Di-glucose-binding within endoplasmic reticulum
berkeley_reactor_200306_planktonic_scaffold_89890_138
unknown

Not on your lists

171528..172208
DNA (681bp) protein (227aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_89890_139
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

172612..174741
DNA (2130bp) protein (710aa)
Multi-sensor signal transduction histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAW4_9BACT
putative signal transduction histidine kinase
Tax=GWA2_Rhodocyclales_65_20_curated
berkeley_reactor_200306_planktonic_scaffold_89890_140
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

174738..175424
DNA (687bp) protein (229aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAQ5_9BACT
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EEF63090.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
two component LuxR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_89890_141
unknown

Not on your lists

175560..176165
DNA (606bp) protein (202aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_89890_142
Trichomonas vaginalis, Trichomonas, Trichomonadida, Eukaryota

Not on your lists

comp(176310..180299)
DNA (3990bp) protein (1330aa)
Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus RepID=H3HTK7_STRPU
Ankyrin repeat protein, putative {ECO:0000313|EMBL:EAY17199.1}; TaxID=5722 species="Eukaryota; Parabasalia; Trichomonadida; Trichomonadidae; Trichomonas.;" source="Trichomonas vaginalis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_89890_143
Leptospira interrogans, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

180382..182721
DNA (2340bp) protein (780aa)
hypothetical protein n=1 Tax=Leptospira interrogans RepID=UPI0002B943D3
lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:AAS69836.1}; TaxID=267671 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira interrogans serogroup Icterohaemorrhagiae serovar; copenhageni (strain Fiocruz L1-130).;"
Displaying items 121-144 of 144 in total

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