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berkeley_reactor_200306_planktonic_scaffold_89890

Search features with annotation key words

Displaying items 31-60 of 144 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_89890_31
RIFOXYB2_FULL_Elusimicrobia_49_7_curated, Elusimicrobia, Bacteria

Not on your lists

37285..37911
DNA (627bp) protein (209aa)
Putative uncharacterized protein n=1 Tax=Fibrobacter succinogenes (strain ATCC 19169 / S85) RepID=C9RRR8_FIBSS
hypothetical protein
Tax=RIFOXYB2_FULL_Elusimicrobia_49_7_curated
berkeley_reactor_200306_planktonic_scaffold_89890_32
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(37927..38529)
DNA (603bp) protein (201aa)
RNA polymerase sigma factor n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPW8_9BACT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ECF subfamily RNA polymerase sigma-24 factor
berkeley_reactor_200306_planktonic_scaffold_89890_33
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

38663..41512
DNA (2850bp) protein (950aa)
Bifunctional uridylyltransferase/uridylyl-removing enzyme n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPW9_9BACT
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277, ECO:0000256|SAAS:SAAS00049024}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII] modification enzyme {ECO:0000256|HAMAP-Rule:MF_00277}; Bifunctional nitrogen sensor protein {ECO:0000256|HAMAP-Rule:MF_00277}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
glnD; UTP:GlnB (protein PII) uridylyltransferase
berkeley_reactor_200306_planktonic_scaffold_89890_trna_1
unknown

Not on your lists

41612..41682
DNA (71bp)
transferRNA Gly
berkeley_reactor_200306_planktonic_scaffold_89890_34
unknown

Not on your lists

comp(42313..42570)
DNA (258bp) protein (86aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_89890_35
unknown

Not on your lists

comp(42882..43070)
DNA (189bp) protein (63aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_89890_36
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

43548..45668
DNA (2121bp) protein (707aa)
Alpha-N-arabinofuranosidase {ECO:0000313|EMBL:EEF61435.1}; EC=3.2.1.55 {ECO:0000313|EMBL:EEF61435.1};; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Alpha-N-arabinofuranosidase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFS1_9BACT
peptidoglycan binding protein
berkeley_reactor_200306_planktonic_scaffold_89890_37
unknown

Not on your lists

45966..46178
DNA (213bp) protein (71aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_89890_38
Pseudomonas syringae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46175..46522
DNA (348bp) protein (116aa)
ISPsy2, transposase n=10 Tax=Pseudomonas syringae group RepID=S6QQ96_PSESF
ISPsy2, transposase
Transposase, IS4 family {ECO:0000313|EMBL:AAY35170.1}; TaxID=205918 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae.;" source="Pseudomonas syringae pv. syringae (strain B728a).;"
berkeley_reactor_200306_planktonic_scaffold_89890_39
Dehalogenimonas sp. WBC-2, Dehalogenimonas, Dehalococcoidia, Chloroflexi, Bacteria

Not on your lists

46903..47133
DNA (231bp) protein (77aa)
ISDet2, transposase orfB n=1 Tax=Dehalococcoides ethenogenes (strain 195) RepID=Q3ZA35_DEHE1
Mobile element protein {ECO:0000313|EMBL:AKG53109.1}; TaxID=943347 species="Bacteria; Chloroflexi; Dehalococcoidia; Dehalogenimonas.;" source="Dehalogenimonas sp. WBC-2.;"
ISDet2, transposase orfB
berkeley_reactor_200306_planktonic_scaffold_89890_40
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(47414..47632)
DNA (219bp) protein (73aa)
Demethylmenaquinone methyltransferase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DQX7_SINAD
Demethylmenaquinone methyltransferase
Demethylmenaquinone methyltransferase {ECO:0000313|EMBL:AGA31418.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_89890_41
unknown

Not on your lists

48147..48389
DNA (243bp) protein (81aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_89890_42
RLO_PLX_64_10, Bacteria

Not on your lists

48782..49888
DNA (1107bp) protein (369aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00036E9FF0
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
berkeley_reactor_200306_planktonic_scaffold_89890_43
RLO_PLX_64_10, Bacteria

Not on your lists

49885..51015
DNA (1131bp) protein (377aa)
muconate cycloisomerase n=1 Tax=Schlesneria paludicola RepID=UPI00029A87AF
L-alanine-DL-glutamate epimerase-like protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
berkeley_reactor_200306_planktonic_scaffold_89890_44
CG_Arma_02, Armatimonadetes, Bacteria

Not on your lists

51046..51888
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000380A3EE
amidohydrolase 2
Tax=CG_Arma_02
berkeley_reactor_200306_planktonic_scaffold_89890_45
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

52007..52660
DNA (654bp) protein (218aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFU1_9BACT
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EEF61455.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
short-chain dehydrogenase/reductase SDR
berkeley_reactor_200306_planktonic_scaffold_89890_46
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

52629..53633
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036E38FE
EamA-like transporter family
Uncharacterized protein {ECO:0000313|EMBL:CDE03693.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
berkeley_reactor_200306_planktonic_scaffold_89890_47
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

53652..54389
DNA (738bp) protein (246aa)
Creatininase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XM41_9BACT
Creatininase {ECO:0000313|EMBL:EEF59034.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
amidase
berkeley_reactor_200306_planktonic_scaffold_89890_48
CG_Arma_02, Armatimonadetes, Bacteria

Not on your lists

54457..55824
DNA (1368bp) protein (456aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBM4_9BACT
Tax=CG_Arma_02
berkeley_reactor_200306_planktonic_scaffold_89890_49
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

55944..56624
DNA (681bp) protein (227aa)
GntR family transcriptional regulator n=1 Tax=Rudanella lutea RepID=UPI00037F32E0
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ADB36681.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
berkeley_reactor_200306_planktonic_scaffold_89890_50
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

57753..58469
DNA (717bp) protein (239aa)
Type II secretory pathway pseudopilin PulG-like protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBP8_9BACT
Type II secretory pathway pseudopilin PulG-like protein {ECO:0000313|EMBL:EEF62933.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_89890_51
Methylococcaceae bacterium Sn10-6, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58525..61608
DNA (3084bp) protein (1028aa)
Immunoglobulin I-set domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEX4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KJV07312.1}; TaxID=1632867 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae.;" source="Methylococcaceae bacterium Sn10-6.;"
outer membrane adhesin-like protein
berkeley_reactor_200306_planktonic_scaffold_89890_52
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

61787..62893
DNA (1107bp) protein (369aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=N2B0K3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EOS17102.1}; TaxID=1235789 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii dnLKV18.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_89890_53
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

62993..64765
DNA (1773bp) protein (591aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DQX1_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA31408.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_89890_54
RIFOXYC12_FULL_Lentisphaerae_60_16_curated, Lentisphaerae, Bacteria

Not on your lists

65106..67520
DNA (2415bp) protein (805aa)
Tax=RIFOXYC12_FULL_Lentisphaerae_60_16_curated
berkeley_reactor_200306_planktonic_scaffold_89890_55
unknown

Not on your lists

comp(67410..67685)
DNA (276bp) protein (92aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_89890_56
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(68182..68859)
DNA (678bp) protein (226aa)
Transposase, IS4 family n=1 Tax=Burkholderia vietnamiensis (strain G4 / LMG 22486) RepID=A4JD53_BURVG
Transposase DDE domain protein {ECO:0000313|EMBL:EXI65803.1}; TaxID=1454001 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-12.;"
transposase, IS4 family protein
berkeley_reactor_200306_planktonic_scaffold_89890_57
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(68816..69199)
DNA (384bp) protein (128aa)
Transposase n=3 Tax=Ralstonia solanacearum RepID=Q68A44_RALSL
Mobile element protein
Mobile element protein {ECO:0000313|EMBL:AGH85979.1}; TaxID=1262456 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum FQY_4.;"
berkeley_reactor_200306_planktonic_scaffold_89890_58
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(69268..70050)
DNA (783bp) protein (261aa)
Transposase IS4 family protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TEI9_9CHLR
Transposase IS4 family protein {ECO:0000313|EMBL:EFH90362.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
transposase
berkeley_reactor_200306_planktonic_scaffold_89890_59
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

71403..73184
DNA (1782bp) protein (594aa)
Uncharacterized protein n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EZ83_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ETZ23900.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
hypothetical protein
Displaying items 31-60 of 144 in total

View Taxonomy