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berkeley_reactor_200306_planktonic_scaffold_161060_52

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 63599..65035

Top 3 Functional Annotations

Value Algorithm Source
GH3 auxin-responsive promoter n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XDZ7_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 53.1
  • Coverage: 463.0
  • Bit_score: 490
  • Evalue 1.50e-135
GH3 auxin-responsive promoter {ECO:0000313|EMBL:EEF61888.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 53.1
  • Coverage: 463.0
  • Bit_score: 490
  • Evalue 2.10e-135
GH3 auxin-responsive promoter similarity KEGG
DB: KEGG
  • Identity: 37.8
  • Coverage: 465.0
  • Bit_score: 293
  • Evalue 7.50e-77

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1437
ATGGTCAATTACGACGACGTCGAACCTTGGATCCAACGCATCCGCAAAGGCGAAACGCGCGTGCTCACCAGCGAACCCGTCACACACCTCATTCCAACCGGGGGTTCGTCGGGTGCCCGCAAGTTAATTCCATTCACCGCCGGACTGCAACGCGAGTTCGACCGCGCAATCAGTCCTTGGATTGTAGACCTGGTCAGACAACATCCGGGCATTCTGCTCGGCCCGGCGTATTGGTCAATTACTCCCCCTCAACAAACTGTTCCAGAATCGGATTCGGCGGTGCCCATCGGCTTCGCGGACGATGCAAGCTATCTCGGCGGAGTAAAACGCCGGTTGATTCGCGCAAGCATGGTTGTTCCCGCAACCTTGGATTTCGGGATGAATTTGGACGCATTTCGTTTTGAAACTCTGTTCAGCCTGCTGCGCGAACGAGACCTCCGCCTGATTTCCGTGTGGCATCCGTCCTTCTTGACTCTGCTGCTTGACGCGCTGCCATCTTGCTGGAACAAGCTGCTGGCGCGAATCAGCGCGACAGATGGGTGCAGGGCAAGGGAACTGAAAAATTGTGATTCCACGATTCCCGAATCACTTTGGCCGCATCTGCACCTGATCAGTTGCTGGGGCGACAGTCACGGTGAACTTCCTCTGGCAGAGTTGCGACAGCGATTCCCGAACGTTCCGATTCAGCCCAAGGGATTGCTCGCAACCGAAGCCGTTGTGAGCATCCCGATGCGAAATTTTCGTCCACTAGCCATTCGTTCGCATTTTTTTGAATTCATTGATCAGCAAGGTCGGCTTCATCGAGCCCATGAATTGCGCCAGCACGAAACCTACGAAGTTGTCGTCACCACATCAGGAGGTTTGTGGCGTTACCGCTTGCAGGATCAGGTTCAGGTGACGGGTTTTCTGAATGAAACTCCGTCTTTGCGTTTCATTGGCCGGATTGGAAACGTGTCGGATTTAAGCGGGGAAAAACTCACGGAAGCATTCGCAGCCAGGGCCATTCAGGAAGCGATGAACCAGTGCAACGCCAAACCCCGGTTTGCCCTGCTTGCTCCGGAAAATGATGCGTTGGGTTGGCGCTACACACTTTACGCCGAAGGAATGGTTCCAGCGGTTTTGGCCGAATTGCTGGAGAATTCGCTCCGCCAAAATCCTCACTATGCAAACTGCCGGGATTTGGGCCAACTGCAGCCTGTCCGAATCTTCAACGTTGCCAGTCATGGATACGAATGTCTGGTTCGCCGTTTAACCATGGAAGGCAAACGGTTGGGTGAAATAAAGCCGATGACGTTTTCGCGCCTGAGTGGCTGGTCAGAAATCTTCGTCAATTTTTCAATCAATGATACTCCTGCACCGTCTTCACACTGTAACCGGCCTTCTTCAGCGCGGCGATGCCGAGCGCGCCGGCGCGGGCGCTGGAGAGAGTGGTCATGA
PROTEIN sequence
Length: 479
MVNYDDVEPWIQRIRKGETRVLTSEPVTHLIPTGGSSGARKLIPFTAGLQREFDRAISPWIVDLVRQHPGILLGPAYWSITPPQQTVPESDSAVPIGFADDASYLGGVKRRLIRASMVVPATLDFGMNLDAFRFETLFSLLRERDLRLISVWHPSFLTLLLDALPSCWNKLLARISATDGCRARELKNCDSTIPESLWPHLHLISCWGDSHGELPLAELRQRFPNVPIQPKGLLATEAVVSIPMRNFRPLAIRSHFFEFIDQQGRLHRAHELRQHETYEVVVTTSGGLWRYRLQDQVQVTGFLNETPSLRFIGRIGNVSDLSGEKLTEAFAARAIQEAMNQCNAKPRFALLAPENDALGWRYTLYAEGMVPAVLAELLENSLRQNPHYANCRDLGQLQPVRIFNVASHGYECLVRRLTMEGKRLGEIKPMTFSRLSGWSEIFVNFSINDTPAPSSHCNRPSSARRCRARRRGRWREWS*