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berkeley_reactor_200306_planktonic_scaffold_158606_193

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(252148..252708)

Top 3 Functional Annotations

Value Algorithm Source
Ribosome-recycling factor n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIZ1_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 69.9
  • Coverage: 186.0
  • Bit_score: 263
  • Evalue 1.50e-67
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 69.9
  • Coverage: 186.0
  • Bit_score: 263
  • Evalue 2.10e-67
ribosome-recycling factor similarity KEGG
DB: KEGG
  • Identity: 48.4
  • Coverage: 184.0
  • Bit_score: 187
  • Evalue 2.30e-45

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 561
ATGACACTTGACGACATTCTGTTGGAAGCGGAAGAAAAAATGGCCAAAACCGAGCAGGTGGTCGTGAATGAGTTTGCCGGTGTCCGCACCGGCAAGGCGTCCGCCGGGCTGGTGGAAAACATCCAGGCCGAAGTGTATGGCTCAATGATGCGCATCCGCGACCTGGCCAACATCACCACGCCGGAATCCCGCATGCTGGTGATTCAGCCGTGGGATGTGGGGTCCCTGCAGCCGATCGAGAAAGCGGTTCAAAAGGCGAACATCGGGCTCAATCCGGTGGTGCAGGGCAAGCTGCTGCGGATCACGTTTCCCGAGTTGAGCACGGAACGTCGCCAGGAATTTGTGAAGATGATCAAGAAGATGGCCGAGGACGGACGCGTGGCCGTCCGCCACGTCCGCCGCGACGCGATGGATCTGTTTAAAAAACATGCGCACGACAGCGGCGTGACCGAGGACGACAAGAAACAGGCGGAAAAGGATCTGCAAAAACTCACCGATGATTACATCGCGAAAATTGACACGCACATGGCGCACAAGGAAAAAGAAATCATGACGGTCTGA
PROTEIN sequence
Length: 187
MTLDDILLEAEEKMAKTEQVVVNEFAGVRTGKASAGLVENIQAEVYGSMMRIRDLANITTPESRMLVIQPWDVGSLQPIEKAVQKANIGLNPVVQGKLLRITFPELSTERRQEFVKMIKKMAEDGRVAVRHVRRDAMDLFKKHAHDSGVTEDDKKQAEKDLQKLTDDYIAKIDTHMAHKEKEIMTV*