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berkeley_reactor_200306_planktonic_scaffold_198771_267

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(331193..331744)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CU29_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 39.5
  • Coverage: 167.0
  • Bit_score: 92
  • Evalue 4.50e-16
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EDY22067.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 39.5
  • Coverage: 167.0
  • Bit_score: 92
  • Evalue 6.30e-16
sigH; sigma factor SigH similarity KEGG
DB: KEGG
  • Identity: 36.7
  • Coverage: 150.0
  • Bit_score: 85
  • Evalue 1.60e-14

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Taxonomy

Chthoniobacter flavus → Chthoniobacter → Spartobacteria → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 552
ATGGCAGGAAACGGCCAAATTCACTGGTGCGCGCCGCTTTACGATGCGAAGGCGGCGGAGTTGATCCTTTATGGACGCGCCCTCGGCCTGTCGCATGGCGAGGCCGAAGACGTGTTGCAGGAGACGTTTGTGGCGTTGACGCGACTGGCGCTGCCGCCGGCGAAACCCGAGCAGTATTGCGTGCGCTGTTTCCGTAACCGGGTGCTGAACCATCGGCGTTCGCTCTGGCGGCGCCTGACCCGCGAATGGGAATCGTTGCGCTGGTTTGAGCAAAGCGCGAGGGAGACGCCGGCGGAACGCGCGGCCATGAATGCGCTGGCGGAACTGCCGGTGGAACAGCGCGAGGTGATTGTTCTCAAAATCTGGCATGGCTGCACCTTCGAGGAGATCGGCGGACTGCTGGAGATTTCACCGAACACCGCCGCGGGGCGTTACCGATACGGGTTGCAAAAAATCAGAATCAAACTGGAGGCATTCACTTATGCAAGAACTGAACTCGACGGAAACGCGGATGCGTTCCTGGCGGCTTCGCTCGCCGGCAGCCGGGCTTAA
PROTEIN sequence
Length: 184
MAGNGQIHWCAPLYDAKAAELILYGRALGLSHGEAEDVLQETFVALTRLALPPAKPEQYCVRCFRNRVLNHRRSLWRRLTREWESLRWFEQSARETPAERAAMNALAELPVEQREVIVLKIWHGCTFEEIGGLLEISPNTAAGRYRYGLQKIRIKLEAFTYARTELDGNADAFLAASLAGSRA*