ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_310897_55

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(82334..83143)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI0003820FF0 similarity UNIREF
DB: UNIREF100
  • Identity: 39.7
  • Coverage: 262.0
  • Bit_score: 166
  • Evalue 3.60e-38
Uncharacterized protein {ECO:0000313|EMBL:EEF60158.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 35.9
  • Coverage: 256.0
  • Bit_score: 139
  • Evalue 6.60e-30
prepilin-type N-terminal cleavage/methylation domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 31.1
  • Coverage: 267.0
  • Bit_score: 89
  • Evalue 1.60e-15

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 810
ATGACCACACGCACACCCTCCACATGGAAACCAAAAAGGTTGAACCTTGCCGGGTTCACCTTGATTGAATTGCTCGTTGTGATCGCCATCATCGCCATTCTGGCCGCAATGCTATTGCCGGCTTTGAGCGCGGCCAAGCGCAAGGCCATCAGGATGCAGTGCTTGAGCAACCTCAAGCAAATTGGCGTGGCGACATATATTTACGTGGGAGACAACAATGAACAATTGCCGGAGCTCGTGGGGTCCGCTGCCTGGGCCTGGGATTTGCCGGACGGAGCCGCGCAGCAAATGCTGGCCAATCTTGGTAATGCGAAGAAGGTGTTTTACTGTCCCAGCACCGCTCCCAGGTTTTCGGATTATGAAAATTTCGAGGCACCGGCTTCGGCCGGGGGAAATTTGTGGGATTTCGGGGGCGGCAATTTTCATGTAATCGGGTATGTATTGGCTTATTGGGGCGCAAATTCATTGTTGATTGCCACCAATCGGAATGTCCACTTGCGCAACGAATCTGTCTCGGTCCCGTCCACCGGACGCGGCGGCGGAACCTCTTACATTACCGGGCCACCGACCGACCGGGTGTTGTCTGCTGACGTCATTTTGAGCACGGCCAATACCACGCCTCCCAAGCCTGCCAATAATTTCACGGACGTGGCGGGGGGATTTAGGATTCACCACGAGAGCGCCCATTTACGTGGCAACATGCCGGAAGGACAGAACATTCTCTATTGCGACAGCCATGCTGAATGGAAAAAGTTTGATGCTAATACGGTCCTGCCGCGGACGGTTTCAGGTCCTTGGTTTTGGTGGTAA
PROTEIN sequence
Length: 270
MTTRTPSTWKPKRLNLAGFTLIELLVVIAIIAILAAMLLPALSAAKRKAIRMQCLSNLKQIGVATYIYVGDNNEQLPELVGSAAWAWDLPDGAAQQMLANLGNAKKVFYCPSTAPRFSDYENFEAPASAGGNLWDFGGGNFHVIGYVLAYWGANSLLIATNRNVHLRNESVSVPSTGRGGGTSYITGPPTDRVLSADVILSTANTTPPKPANNFTDVAGGFRIHHESAHLRGNMPEGQNILYCDSHAEWKKFDANTVLPRTVSGPWFWW*