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berkeley_reactor_200306_planktonic_scaffold_69065_37

Organism: 2019_SCN_bioreactor_200211_planktonic_Bacteroidetes_50_37

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38
Location: 47346..48101

Top 3 Functional Annotations

Value Algorithm Source
response regulator n=1 Tax=Pedobacter agri RepID=UPI00029A7CC9 similarity UNIREF
DB: UNIREF100
  • Identity: 49.4
  • Coverage: 247.0
  • Bit_score: 256
  • Evalue 2.50e-65
Response regulator {ECO:0000313|EMBL:EDM35332.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 49.2
  • Coverage: 244.0
  • Bit_score: 251
  • Evalue 1.10e-63
response regulator of the LytR/AlgR family similarity KEGG
DB: KEGG
  • Identity: 45.1
  • Coverage: 246.0
  • Bit_score: 217
  • Evalue 3.60e-54

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Taxonomy

Pedobacter sp. BAL39 → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 756
ATGCTACGTGTACTCCTGATTGACGACGAACCTGTAATTCGTAAAGACATGGAAATGCTGCTGCAAAAGCATGACGACATTGTTGTAGTCGGCGCCTGCGGCAGCGTGAAAGAAGCAGCCGTATTGCTCAATACGACGAATCCCGACCTGCTGTTGCTCGATATCCAGCTGAGCGATGGCACGGGTTTCGACCTGTTGCAGGGGCTGGAACAGATCCCCTTCCAGGTGATCTTTATAACGGCATACAACCAGTTTGCGATCAAAGCCATTAAATACGGCGCACTGGATTACCTGCTCAAACCCATCGACGAACTGGAACTGCAGGAAGCCCTGGATAAAGTAAGGGCCGCGCGCAGGCAACTGAGCGACTCGATCAAGGAAGGCTGGAACGTTGCCCGCAACCACCTGAACCAGGTCAATAAAGGACTGCAGGACCGTATTGTGCTCCGCTCACAGCAATACCTGCAGGTTGTTCCCTTCGAAGAGATCGTGTATTGCCAGAACGATGGCGGTTATACGCACTTTCACCTGACGAGTAAGAAAAAGATCGTGGTCAGCAAATCGATCAAAGAATACAACGACCTGCTACCCGACGACCAGTTCCTGAGGCCGCACCAGTCGTACCTGGTCAACGTCCGCTTTATCGATAAGTTTCATAAAGACGGTTACCTGGTGCTGCGTACGGGGGAAGAAATACCCGTATCGACCCGGAAGAAAGATCATGTCGTTTCCTTCTTAACCGGCAACAGGACCTAA
PROTEIN sequence
Length: 252
MLRVLLIDDEPVIRKDMEMLLQKHDDIVVVGACGSVKEAAVLLNTTNPDLLLLDIQLSDGTGFDLLQGLEQIPFQVIFITAYNQFAIKAIKYGALDYLLKPIDELELQEALDKVRAARRQLSDSIKEGWNVARNHLNQVNKGLQDRIVLRSQQYLQVVPFEEIVYCQNDGGYTHFHLTSKKKIVVSKSIKEYNDLLPDDQFLRPHQSYLVNVRFIDKFHKDGYLVLRTGEEIPVSTRKKDHVVSFLTGNRT*