ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_101710_105

Organism: 2019_SCN_bioreactor_200211_planktonic_Bacteroidetes_50_37

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38
Location: comp(119238..119699)

Top 3 Functional Annotations

Value Algorithm Source
Uncharacterized protein n=1 Tax=Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 / NCIMB 1366 / Sio-4) RepID=I4AJM8_FLELS similarity UNIREF
DB: UNIREF100
  • Identity: 53.3
  • Coverage: 152.0
  • Bit_score: 181
  • Evalue 6.10e-43
araC; AraC family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 55.9
  • Coverage: 152.0
  • Bit_score: 186
  • Evalue 3.20e-45
AraC family transcriptional regulator {ECO:0000313|EMBL:BAP32196.1}; TaxID=878220 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. StRB126.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 55.9
  • Coverage: 152.0
  • Bit_score: 186
  • Evalue 1.60e-44

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Chryseobacterium sp. StRB126 → Chryseobacterium → Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 462
ATGAATACCATACAGTTACCTGCCTTTTCAATTATCGGCATCAGCGTACGTACCACCAACGAAAACAACCAGGCCCTACAGGATATTCCCGCACTCTGGGAACGTTTCTTTTCGGAAAACATTATGGAACAGATACCCGGTCGCGAAAGCACCGACCTGTACTGCGTGTATACCGATTATGAAAAGGACCATACCCGGCCGTATACCACGGTATTGGGTTGCCGGGTAAGCGATGGCAGCCCCGTGCCTGAGGGCATGCAGGCGGTCAACTTTCCCGAACGGAATTATGTACAGTTCGAAGCCAAAGGCAACCTGAACGAAGGCGCCGTTGTCGAAACCTGGCAGCAAATATGGCAAAGCCCGATATCCCGTGCCTTTACCGCCGACTTTGAACACTACGGGGAGAAAGCCCATGTACCCAAAGAAGCGGAAGTTGATATCTTTATCGCCGTTAATGCCTGA
PROTEIN sequence
Length: 154
MNTIQLPAFSIIGISVRTTNENNQALQDIPALWERFFSENIMEQIPGRESTDLYCVYTDYEKDHTRPYTTVLGCRVSDGSPVPEGMQAVNFPERNYVQFEAKGNLNEGAVVETWQQIWQSPISRAFTADFEHYGEKAHVPKEAEVDIFIAVNA*