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berkeley_reactor_200306_planktonic_scaffold_101710_160

Organism: 2019_SCN_bioreactor_200211_planktonic_Bacteroidetes_50_37

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38
Location: comp(181594..182109)

Top 3 Functional Annotations

Value Algorithm Source
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 41.2
  • Coverage: 170.0
  • Bit_score: 113
  • Evalue 2.50e-22
Shikimate kinase (EC:2.7.1.71) similarity KEGG
DB: KEGG
  • Identity: 39.7
  • Coverage: 151.0
  • Bit_score: 97
  • Evalue 2.20e-18
Shikimate kinase id=3991090 bin=GWF2_Bacteroidetes_38_335 species=Pedobacter heparinus genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11 similarity UNIREF
DB: UNIREF100
  • Identity: 37.7
  • Coverage: 167.0
  • Bit_score: 104
  • Evalue 6.30e-20

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Taxonomy

Flammeovirgaceae bacterium 311 → Cytophagales → Cytophagia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 516
ATGCGCTTATTCCTGACCGGCATGCCCGGTAGCGGCAAAACTTACTGGATGCAACAACTGGCCGAAACGCTGCAGTGGGCACAGATAGACCTTGATGCCCTGATCGAAGCCGAAAACGGCGCTACGATTCCCGAATTGTTTGCCCGTGGCGAATCCTATTTCCGGCAATGTGAGCAGGCGGCGCTGCAATTGGCCATAAGCCGCTCCGGCAAGGCTCCTACCATCATATCAACGGGCGGCGGCTTACCCGCCTACCCCGGCAATATAGCCCTGATGCAGGCGGCTGGCAAAATCATTTACCTTTACTCGTCTGTAGCACAACTGGCCCAAAGGGTAAGCCGCGACCCGGGCACACGCCCCTTGCTGGCTACGGGTAACCCCGGTGTGTTAAAAGAAAAACTGGAAAACCTGCTGCAACAAAGACAGTTTTTTTATGAGCAGGCTGATATAAAAATTGAGGTCGATAACCTATCCCTCGCTACCTTTGCAGCGCAGCTACGCAAGTACATTCTTTAA
PROTEIN sequence
Length: 172
MRLFLTGMPGSGKTYWMQQLAETLQWAQIDLDALIEAENGATIPELFARGESYFRQCEQAALQLAISRSGKAPTIISTGGGLPAYPGNIALMQAAGKIIYLYSSVAQLAQRVSRDPGTRPLLATGNPGVLKEKLENLLQQRQFFYEQADIKIEVDNLSLATFAAQLRKYIL*