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berkeley_reactor_200306_planktonic_scaffold_59817_41

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_60_20

near complete RP 47 / 55 MC: 1 BSCG 48 / 51 ASCG 15 / 38
Location: 42791..43708

Top 3 Functional Annotations

Value Algorithm Source
transcriptional regulator, LysR family protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174565A similarity UNIREF
DB: UNIREF100
  • Identity: 52.2
  • Coverage: 314.0
  • Bit_score: 293
  • Evalue 1.30e-76
Transcriptional regulator {ECO:0000313|EMBL:EIP99004.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 46.5
  • Coverage: 297.0
  • Bit_score: 256
  • Evalue 4.20e-65
LysR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 46.5
  • Coverage: 297.0
  • Bit_score: 255
  • Evalue 1.40e-65

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Taxonomy

Opitutaceae bacterium TAV1 → Opitutales → Opitutae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 918
ATGAATCGTCCGACCGTTCGCGAGCTGGAGTGCTTCACCGCCGTCGCCGAGGAGCTGAACTTTTCCCGCGCCGCGCGCCGCCTGAATCTCAGCCAGCCCCCGCTCACGCGGCAAATCCAGTCGCTGGAGGAAAAGCTCGGCTGTCCGCTGCTGGAGCGCAGCACGCGCTCGGTCGCGATCACCGCCGCCGGGCGGCTCTTCCTGGAGGACGCCCGCGCCGTGCTCCAGCGCCTCGACGCCGCGCGCGATGCCGTGCTCCGCGCCGCCGGGGGCGAGGTCACGCGGCTGCGCATCGGGTTTGTCGGCGCTCTGCTCGACGAATCCCTCGTCCGCCTGCTCCAGACCTTTCGCGAGACGCACCCGCAGTGCCAGGTCAGCCTGGAGGACCTCTCGCCCGCCGCGCAGCTTGAGGCGCTCGCCGCCGGGCGCATCGACGGAGCCTTCCTCGGCGCGCCGCCGCATTCCCTGCGCCGCGGCCTCGCGAGCTTCATCTGGCAGCGCGAACCCCTCGGCATCGCCCTCCCCGCCGCGCACCCGCTGGCCGCCGCGCGTTCGCTCCCCATCGCCCGCCTCCGCGACGAAGGCTGGATCATGGTCTCCCGCGAAGCCGCCCCGGCCTTCCGCCGTCAGTTTGACACCCTCTGCGCCGCCGAGGGGTTCAAGCCCCGCATCGTGCAGGAATCCGAGCGCGTCGCCGCCGTGCTCACCATGGTCGCCGCCGGCCAGGGCATCAGCCTCCTCCCCGTGACGATGGGCAAATTTCTCACCCAGGGCGTCACCATCCGCCCCCTCCCCGGCCGCCAACCACCCACTCTCGACCACACCTTCGTCTATAAAAAGGCCAGCCCCGCTCCGCCTCTCGCGGATTTTGTACGGCTGCTCGGGTCGCCCGGGAAACGCTTGCACTTCGTCCTATAG
PROTEIN sequence
Length: 306
MNRPTVRELECFTAVAEELNFSRAARRLNLSQPPLTRQIQSLEEKLGCPLLERSTRSVAITAAGRLFLEDARAVLQRLDAARDAVLRAAGGEVTRLRIGFVGALLDESLVRLLQTFRETHPQCQVSLEDLSPAAQLEALAAGRIDGAFLGAPPHSLRRGLASFIWQREPLGIALPAAHPLAAARSLPIARLRDEGWIMVSREAAPAFRRQFDTLCAAEGFKPRIVQESERVAAVLTMVAAGQGISLLPVTMGKFLTQGVTIRPLPGRQPPTLDHTFVYKKASPAPPLADFVRLLGSPGKRLHFVL*