ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_59817_477

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_60_20

near complete RP 47 / 55 MC: 1 BSCG 48 / 51 ASCG 15 / 38
Location: comp(540535..541575)

Top 3 Functional Annotations

Value Algorithm Source
Radical SAM domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XK44_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 60.7
  • Coverage: 346.0
  • Bit_score: 430
  • Evalue 1.00e-117
Radical SAM domain protein {ECO:0000313|EMBL:EEF59867.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 60.7
  • Coverage: 346.0
  • Bit_score: 430
  • Evalue 1.40e-117
DNA repair photolyase similarity KEGG
DB: KEGG
  • Identity: 60.4
  • Coverage: 346.0
  • Bit_score: 416
  • Evalue 4.30e-114

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1041
ATGCACGTTCCGGGGCGGGGCGCGACGATCAATCCGCGCGGGCGCTTCGAGCGTCTGGAGGTCGCGTTGGAGGAAGAGGCCGAGCACGAGGCGGGGCGTCCGCGCACTGTCTACCTGCGCGACGACTCGCAATCGATCATCTCGACCAATGACAGTCCGGATATCGGATTCCGGTCGAGCATCAACCCCTACCGGGGCTGCGAGCATGGATGCTCGTATTGTTATGCCCGGCCTTATCACGAGTATCTGGGATTTTCCGCCGGTCAGGATTTTGAGACGAAGATCATGGTGAAGCCGGATGCGGCGAAGCTCCTACGCAAGGCTCTGTCATCGCCAAAGTGGCAGCCGGAGGTGCTCGCGATCAGCGGAGTGACCGATTGTTATCAGCCGGTGGAGCGCAAGCTGGAGATCACGCGCCAATGCCTGGCGGTGCTCGCGGAATTTCGCAATCCCTGTGTGATAGTGACGAAGAATCATCTCGTTACTCGCGACATTGATCATTTGCGCGAGCTGGCAGCCCATCAGGCGGCGATGGTTTTCATTTCTGTGACCACACTCGATACGGATCTGGCCTCCACGCTGGAGCCGAGGGCGGCGACTCCGGCCTACCGTCTCGATGCCATCCGGCAGCTGGCGGATGCGGGAATACCAGTTGGCGTATTGACAGCGCCCGTCATTCCCGGACTGAACGAGCATGAAATCCCGTCGATCCTGAAAGCGGCGAGGGAGGCTGGGGCGGGAACGGCTGGCTACACGGTGATCCGGCTGCCGTATGGCGTGAAAGATGTTTTTGCAGCCTGGCTGGAAACGCACCACCCGGGTTCGAAGGAGAAAATCCTCGATCGTATTCGCGACATGCGGGGCGGTCAGCTTAACCGCAGCGACTTTGCCACCCGGATGAGAGGCGAGGGGATCTGGGCGGAGCAAATCCGCCAGCTGTTTCGAACAGTACGGCAACGCGAGGGGCTGGAAGGTCGACGGATCGAGTTATCCGTGGACCATTTCCGTCGCTTGGGCGGCGAGCAATTATCGCTTTTTTGA
PROTEIN sequence
Length: 347
MHVPGRGATINPRGRFERLEVALEEEAEHEAGRPRTVYLRDDSQSIISTNDSPDIGFRSSINPYRGCEHGCSYCYARPYHEYLGFSAGQDFETKIMVKPDAAKLLRKALSSPKWQPEVLAISGVTDCYQPVERKLEITRQCLAVLAEFRNPCVIVTKNHLVTRDIDHLRELAAHQAAMVFISVTTLDTDLASTLEPRAATPAYRLDAIRQLADAGIPVGVLTAPVIPGLNEHEIPSILKAAREAGAGTAGYTVIRLPYGVKDVFAAWLETHHPGSKEKILDRIRDMRGGQLNRSDFATRMRGEGIWAEQIRQLFRTVRQREGLEGRRIELSVDHFRRLGGEQLSLF*