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berkeley_reactor_200306_planktonic_scaffold_151594_127

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_60_20

near complete RP 47 / 55 MC: 1 BSCG 48 / 51 ASCG 15 / 38
Location: 138726..140498

Top 3 Functional Annotations

Value Algorithm Source
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 56.8
  • Coverage: 595.0
  • Bit_score: 647
  • Evalue 9.60e-183
ligA; NAD-dependent DNA ligase LigA (EC:6.5.1.2) similarity KEGG
DB: KEGG
  • Identity: 49.6
  • Coverage: 585.0
  • Bit_score: 548
  • Evalue 2.10e-153
DNA ligase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGZ1_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 56.8
  • Coverage: 595.0
  • Bit_score: 647
  • Evalue 6.80e-183

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1773
ATGCAAAGCCTTGATAACACTTATAATGAGGAAGATGTAACCAGCTTCATCGGGCGACTCAAGAAGCTACTTCCCAATGTCGAGATACCTCTAACAGTCGAAACCAAGGTTGATGGCGTTGCCATTTCCCTCCTGTATGAAAATGGGAGTTTCATCCGCGCCGCAACCCGCGGCGATGGGATAGTCGGAGAGGACGTTACGGAGAATATTCGCACCATCAAATCGGTGCCGCATATTTTAAGGGGCAAAGCCCCGAAGCGAATCGAGATTCGCGGCGAAGTCTATCTTCCCAAGGCACAGTTTGCCCGTATCAATGAGGAGCGCGACGAACAGGGCCTATCCGCCTTTGCCAACCCTCGAAATGCGGCGGCAGGTTCGCTCAAACATCTCGACTCTCGCATCACGGCAAAACGCAGATTGGAGGCGGTGTTTTACGGCTTTGGCATTTATGAAGACGAGAAACCGCCGACCCAGACAGCTTTTTTTCAACTACTAGCCGATTGGGGTATTCCAACCTCTGAATGGGTGCGCCGAACTGTAACTGTCGAAGAGACATTGAGTGCCATTCACGACCTCGACAAAGTTCGCCATGACTTTGCCTACGAGACCGACGGCGCAGTGCTGAAGGTCGACATACTCGCGCAGCGCGAACAGCTCGGCTCCACCTCCAAGGCCCCGCGGTGGGCGATCGCCTACAAATATGAACCCGAGCGCGCCCGCACCCGGCTGCACGCCATCACCATCCAGGTGGGACGCACCGGCGTGCTCACCCCGGTGGCGGAACTTGATCCCGTCTTCGTGAGCGGCAGCACGGTCAGCCGGGCCACTCTGCACAATGAAGAGGAGGTTCACCGCAAGGACATCCGCGTCGGAGACTGGGTGCTCATCGAAAAAGCGGGTGAGGTCATTCCCGCCGTGGTCGAGGTACTGAAAACCGAGCGCACCGGAAAGGAAGTGCCATTTCAGATGCCGGATCACTGCCCATCCTGCGGCGGCACCGTGCTCCGCGAGGAAGGCCAGGTCGCCGTCCGCTGCACCAACCCCTCCTGCGACGCCCAACTCCGCCGCCGACTGGAGCACTACGCCCACCGGGGCGCGATGGATATCGAGGGCCTGGGCGAGAGCATGGTCGACCAGCTCATTTCCGCCAATCTGGTGTCTGGCATCACCGATATATACTCTCTCACTGCCGACCAGCTCCTCGGCCTCGAGCGGATGGGGGAAAAAAGCGCGTCCAATCTCCTCGCGGGCATCGACGCTAGCCGCAACCGCCCGCTGTGGCGGCTGCTCTTTGGCCTCGGCATCCTGCACGTCGGCGCCGCCGCCGCTCGCAAGCTGGCCGATCGCTTCCGCACCATGGAGGCACTGGCTACTGCGACGGAGGAGGAGTTGAAGGCGACCGAGGATGTCGGCGAGGTCATGGCACGCAGCATTCACCAGTGGTTCCGCAACCCAAAGGTGGTCGAGCTGCTTGAGAGCCTCAAGGCCGCCGGTTTGAATTACGGCGAACGTGACGAGCATGGCGGGTCGGGCGATGGAAAATTCAAGGGGACCACGTGGGTCATCACCGGCACCCTCAGTTCACCCCGCGATGAGATTGCCGAGATAATCCGCCAGAATGGGGGCACGGTTTCCGGCAGTGTGAGCAAAAAGACCACCTATCTGCTCGCGGGCGAGGAAGCCGGCAGCAAACTCGAGAAAGCCCGCAAACTCGGCGTGAAGGAACTCACCGAGGCCGAGTTCCGCAAGTTCCTCGACGGGAGCACGGAATAA
PROTEIN sequence
Length: 591
MQSLDNTYNEEDVTSFIGRLKKLLPNVEIPLTVETKVDGVAISLLYENGSFIRAATRGDGIVGEDVTENIRTIKSVPHILRGKAPKRIEIRGEVYLPKAQFARINEERDEQGLSAFANPRNAAAGSLKHLDSRITAKRRLEAVFYGFGIYEDEKPPTQTAFFQLLADWGIPTSEWVRRTVTVEETLSAIHDLDKVRHDFAYETDGAVLKVDILAQREQLGSTSKAPRWAIAYKYEPERARTRLHAITIQVGRTGVLTPVAELDPVFVSGSTVSRATLHNEEEVHRKDIRVGDWVLIEKAGEVIPAVVEVLKTERTGKEVPFQMPDHCPSCGGTVLREEGQVAVRCTNPSCDAQLRRRLEHYAHRGAMDIEGLGESMVDQLISANLVSGITDIYSLTADQLLGLERMGEKSASNLLAGIDASRNRPLWRLLFGLGILHVGAAAARKLADRFRTMEALATATEEELKATEDVGEVMARSIHQWFRNPKVVELLESLKAAGLNYGERDEHGGSGDGKFKGTTWVITGTLSSPRDEIAEIIRQNGGTVSGSVSKKTTYLLAGEEAGSKLEKARKLGVKELTEAEFRKFLDGSTE*