ggKbase home page

cn_combo_scaffold_375_1

Organism: CN-SCN_Pelagibacterium_44x

megabin RP 51 / 55 MC: 39 BSCG 50 / 51 MC: 37 ASCG 13 / 38 MC: 11
Location: 289..2346

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGS2_PELHB similarity UNIREF
DB: UNIREF100
  • Identity: 78.4
  • Coverage: 699.0
  • Bit_score: 1012
  • Evalue 1.60e-292
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphom similarity UNIPROT
DB: UniProtKB
  • Identity: 95.3
  • Coverage: 685.0
  • Bit_score: 1273
  • Evalue 0.0
RNA polymerase sigma factor RpoD similarity KEGG
DB: KEGG
  • Identity: 78.4
  • Coverage: 699.0
  • Bit_score: 1012
  • Evalue 4.50e-293

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Devosia chinhatensis → Devosia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2058
ATGGCCACCAAGGCAGCGAACAAAGTTTCCAAGGATACCGAAAAGCCGGAATCCGGCGCGCCTGAGACCTCCAATGACGGTCCCTTGATCGACCAGAACGATGCTGCGGTCAAAAAACTCATCAAGGTCGCCAAGAAACGCGGCTATGTCACCTACGAAGAATTGAACGCCGTGCTGCCCTCCGACGAGGTCAGCTCCGAGCAGATCGAAGACTTCATGTCCATGTTCTCGGAAATGGGCATCAATGTCGTCGACGAGGACGAGGTCGAGGAGACCGAGGTCGAGAAGGAAGAGGACGAGAGCGGCACCGAAGTCGCCACTTCGACCGGCACCGCCGTCGCCAATACCTCCAATACCAAATCCGGCTCCGACCGTACCGATGATCCGGTGCGCATGTATCTGCGCGAAATGGGCTCGGTGGAATTGCTCAGCCGCGAGGGCGAAATCGCCATCGCCAAGCGCATCGAGGCCGGCCGCGAGACCATGATCGAGGGCCTCTGCGAGAGCCCGCTGACGTTCCAGGCCATCATCATCTGGCGCGACCAGCTCGCCCAGGGCGAAATCCTGCTGCGCGACATCATCGACCTGGAAGCCACCTATGCCGGCCCCGACGCCAAGCAGGCGGCCCCGGAAATCCCGGTGGCGCCGCCGCGGCCCGAGCCCGAGCCGGTGAAGGAAAAGGCCAAGCCGGCCCCCAAGCGCGCTTCTTCCGGCGACGATGACGACGATTACGTGCCCGAGGAGCCCGAGGCCCCGCAGGACCCGGTCGAGGACGACGACGACGAGTTCGACAATGCCCTTTCGCTCTCGGCCATGGAAGCCGAGCTCAAGCCGCAGGTGGTGGAGACCTTCAACCGCATCGCCGAGGCCTATGGCCAGATGCGCGAGATGCAGGACCGCCATGCCGAGGACCGCACCGCCACCGTTTCGGACGCGGAGAATGCCCGGCTCAGTGCATTACGCGGCGAAGTGATCACCGACGTGAAGTCGCTGTCGCTCAATGCCGGGCGTATCGAAAGCCTGGTGGAGCAGCTCTACGACATCAACAAGCGCCTGGTGCGTCTCGAGGGGCGCCTGCTGCGCCTGGCCGAGAGCTATGGCGTCAAGCGCGAAGCCTTCCTCGAGAACTATTACGGCCGCGAGCTGGACCCGAGCTGGGAATGGTCGCTGGAGAGTTTCGAGGGCAAGGGCTGGGGCGAATTCGCCCGCCGCGAGACCGACACCATCGCCGATATCCGCCGCGAGATCGCGACGCTGGCCACCGAGGCCGGCCTCGATATCGGGGAATATCGCCGCCTGGTGCACAAGGTGCAGAAGGGCGAGCGCGAAGCGGCCATCGCCAAGAAGGAAATGGTCGAGGCGAACCTGCGCCTCGTGATCTCCATCGCCAAGAAGTACACCAACCGCGGCCTGCAATTCCTCGACCTGATCCAGGAAGGCAATATCGGGCTGATGAAGGCGGTCGATAAGTTCGAATATCGCCGCGGCTACAAGTTCTCCACCTATGCGACCTGGTGGATTCGCCAGGCCATCACCCGGTCCATCGCCGACCAGGCGCGCACCATCCGCATTCCGGTGCACATGATCGAGACGATCAACAAGATCGTCCGTACCAGCCGCCAGATGCTGCACGAAATCGGCCGTGAGCCGACGCCGGAGGAATTGTCTGAGAAGCTGCAGATGCCGCTCGACAAGGTCCGCAAGGTCCTCAAGATCGCCAAGGAGCCGATCAGCCTCGAAACCCCGATCGGCGACGAGGAGGATTCCAACCTCGGCGATTTCATCCAGGACGTGAACGCGGTGCAGCCGATCGATGCGGCGATCCAGTCCAATCTGCGCGAGACGACGACCCGGGTCCTGGCCTCGCTGACGCCGCGCGAGGAGCGCGTGCTGCGCATGCGCTTCGGCATCGGCATGAACACCGATCACACGCTGGAGGAGGTCGGCCAGCAATTCTCGGTCACGCGCGAGCGTATCCGCCAGATCGAAGCCAAGGCGCTGCGCAAGCTGAAGCATCCGAGCCGGAGCCGGAAGCTGAGGAGCTTCCTGGATAATTAG
PROTEIN sequence
Length: 686
MATKAANKVSKDTEKPESGAPETSNDGPLIDQNDAAVKKLIKVAKKRGYVTYEELNAVLPSDEVSSEQIEDFMSMFSEMGINVVDEDEVEETEVEKEEDESGTEVATSTGTAVANTSNTKSGSDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIEGLCESPLTFQAIIIWRDQLAQGEILLRDIIDLEATYAGPDAKQAAPEIPVAPPRPEPEPVKEKAKPAPKRASSGDDDDDYVPEEPEAPQDPVEDDDDEFDNALSLSAMEAELKPQVVETFNRIAEAYGQMREMQDRHAEDRTATVSDAENARLSALRGEVITDVKSLSLNAGRIESLVEQLYDINKRLVRLEGRLLRLAESYGVKREAFLENYYGRELDPSWEWSLESFEGKGWGEFARRETDTIADIRREIATLATEAGLDIGEYRRLVHKVQKGEREAAIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELSEKLQMPLDKVRKVLKIAKEPISLETPIGDEEDSNLGDFIQDVNAVQPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN*