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cn_combo_scaffold_1103_20

Organism: CN-SCN_Pseudonocardia_51x

partial RP 9 / 55 MC: 1 BSCG 8 / 51 MC: 1 ASCG 4 / 38
Location: 20122..21294

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3IVI7_FRASU similarity UNIREF
DB: UNIREF100
  • Identity: 60.0
  • Coverage: 390.0
  • Bit_score: 437
  • Evalue 1.60e-119
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 59.8
  • Coverage: 391.0
  • Bit_score: 437
  • Evalue 4.50e-120
Putative RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADP82493.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain similarity UNIPROT
DB: UniProtKB
  • Identity: 59.8
  • Coverage: 391.0
  • Bit_score: 437
  • Evalue 2.20e-119

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Taxonomy

Frankia sp. EuI1c → Frankia → Frankiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1173
GTGATCGAGGAGGTCTTCCGCGCGGAATGGTCGCGGGTCGTCGCGACGCTCGTCGGCTTCTGCGGCGACCTGCACGTCGCCGAGGACGCGGCGCAGGAGGCCTTCGCGGCCGCGGCCCGGCGCTGGCCCGTCGACGGTCCGCCCGACGCGCCCCGCGCATGGCTGGTCACCGTGGCCCGCAACCGGGCCGTCGACATCCTGCGCCGCGAGCGCCGGCACGCCGAGAAGCTGCGGGAGCTCCATCCCCCGGACCGACCCGTCGAGGAGGTGGCGGACGTGGCCGAGCCGGCTGTCGTCGACGACGAGCGCCTGGAACTGATCTTCCTGTGCTGTCACCCGGCGCTGGCCCCGGAGGCGCAGGTGGCCCTGACCCTTCGCGCCGTCGGCGGCCTGGACACCCCCGAGATCGCGCTGGCCCTCCTTGTCACCGAGGAGACCATGAAGCGCCGGCTCACCCGCGCCCGGTCGAAGGTCCGCGACGCCGGCATCCCGTTCCGGGTGCCCGACGAGACGCTGCTGCCGCAACGTCTCGACACCGTGCTCACCGTGCTGTACCTGATCTTCAACCAGGGCTGGGGCGACGGCCGGACCGACCTCGCCATCGAGGCGATCCGGCTCGCCACCCTCCTCGACGAGCTGCTCCCCGACCAGCCGCAGGTGACCGCGCTGCGCGCCCTCATGCTGCTCCACGACTCGCGGCGGGCCGCCAGGTTCCGCGACGGGGCGATCGTGCCGCTGGCCGAGCAGGACCGCACGCTGTGGGACACTGGCCGGATCGCCGCCGGGCGCGAGTTGCTCGGCCGGGCCCTGGCCCGCGGCGCCCGCGGACCGTACGCACTGCAGGCCGCGATCGCGGAGCTGCAGACCTGCGACCCGATCGACTGGGTCGAGGTCCGCCGCCTCTACGACACCCTGCTCGCGACGACGGGCTCGGCGGTGGTCGCGCTGAACCGTGCCGTCGCCGTCGCCGAGACCGACAGTCCCGCCGCGGCGCTCGCGATCGTCGACGGCCTGGACCTCGGCGACTACCGCTACCTGCACTCGACCCGCGCCGAGCTCCTGCGCAGGCTCGGCGACCGCGACGCCGCACGCGCCGCCTACGACGAAGCCATCAGGCTCGCCGCGGGCGACGCCGAGCGCCTCTTCCTCACGCGCCGCCGCGCCGACCTGTGA
PROTEIN sequence
Length: 391
VIEEVFRAEWSRVVATLVGFCGDLHVAEDAAQEAFAAAARRWPVDGPPDAPRAWLVTVARNRAVDILRRERRHAEKLRELHPPDRPVEEVADVAEPAVVDDERLELIFLCCHPALAPEAQVALTLRAVGGLDTPEIALALLVTEETMKRRLTRARSKVRDAGIPFRVPDETLLPQRLDTVLTVLYLIFNQGWGDGRTDLAIEAIRLATLLDELLPDQPQVTALRALMLLHDSRRAARFRDGAIVPLAEQDRTLWDTGRIAAGRELLGRALARGARGPYALQAAIAELQTCDPIDWVEVRRLYDTLLATTGSAVVALNRAVAVAETDSPAAALAIVDGLDLGDYRYLHSTRAELLRRLGDRDAARAAYDEAIRLAAGDAERLFLTRRRADL*