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cn_combo_scaffold_3083_22

Organism: CN-SCN_Pseudonocardia_86x

partial RP 15 / 55 MC: 1 BSCG 14 / 51 MC: 2 ASCG 7 / 38 MC: 1
Location: 20205..21080

Top 3 Functional Annotations

Value Algorithm Source
Sigma factor, sigma 70 type, group 4 (ECF) n=1 Tax=Streptomyces gancidicus BKS 13-15 RepID=M3BYB2_9ACTO similarity UNIREF
DB: UNIREF100
  • Identity: 82.7
  • Coverage: 289.0
  • Bit_score: 472
  • Evalue 4.30e-130
Sigma factor, sigma 70 type, group 4 (ECF) {ECO:0000313|EMBL:EMF29054.1}; TaxID=1284664 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces gan similarity UNIPROT
DB: UniProtKB
  • Identity: 82.7
  • Coverage: 289.0
  • Bit_score: 472
  • Evalue 6.10e-130
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 80.3
  • Coverage: 290.0
  • Bit_score: 462
  • Evalue 1.30e-127

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Taxonomy

Streptomyces gancidicus → Streptomyces → Streptomycetales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 876
GTGACCGCCACCGCCTCGTTCGTCGCCCACCGCAACCTGCTCTTCACGGTCGCCTACGAGATGCTCGGCTCCGCCGCCGACGCCGAGGACGTCCTGCAGGAGACCTGGCTGCGCTGGGCGGGCGTCGACCTCGCCGAGGTCCGCGACCACCGCGCCTACCTCGTCCGCATCACCACCCGGCAGGCGCTCACCAGGCTGCGGACTCTCGGCAGGCGCAAGGAGTCCTACGTCGGGCAGTGGCTGCCCGAACCGCTGCTCACCACCCCCGACGTCGCCGACGACGTCGAGCTCGCCGACAGTGTCTCCATGGCCGTGATGCTCGTGCTGGAGACCCTCGCGCCCACCGAGCGGGCCGTCTTCGTCCTCCACGACGTGTTCGACGTCGGCTACGACGAGATCGCCGAGGCCGTCGACAAGACCCCCGCTGCCGTGCGCCAGATCGCCCACCGCGCCCGTGCCCACGTCGCTGCCCGCAGGCCCCGCGGCAGGGTCACCCAGGACGAGAGCCGCGGTGCCCTCGACGCCTTCCGCCGCGCCGTCGAGACCGGGGACCTACAGGGCCTGCTCGACGTCATGGCCCCCGACGTCGTCCTCGTCGGTGACGGGGGAGGCATCAAACAGGCGGTGCTGAAGCCCGTCGTCGGTGCCGACAAGGTCGGCAGGCTGCTCACCACGGGCTGGGCCCGCGTGCCGGGCGAGGTCACCCTGGAACCGGTGCAGGTCAACGGCTACCCCGCGCTCGTCCTGCGCATCGACGGGGAACTCGACGCCGTCGTCGCCCTGCGCATCGACGACGGCCGCGTCACCGGCCTCTACGCCGTCCGCAACCCGCAGAAGCTCTCGCACATGGACCGCGCGACCACCCTGCGCCGCTGA
PROTEIN sequence
Length: 292
VTATASFVAHRNLLFTVAYEMLGSAADAEDVLQETWLRWAGVDLAEVRDHRAYLVRITTRQALTRLRTLGRRKESYVGQWLPEPLLTTPDVADDVELADSVSMAVMLVLETLAPTERAVFVLHDVFDVGYDEIAEAVDKTPAAVRQIAHRARAHVAARRPRGRVTQDESRGALDAFRRAVETGDLQGLLDVMAPDVVLVGDGGGIKQAVLKPVVGADKVGRLLTTGWARVPGEVTLEPVQVNGYPALVLRIDGELDAVVALRIDDGRVTGLYAVRNPQKLSHMDRATTLRR*