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cn_combo_scaffold_2516_20

Organism: CN-SCN_Pseudonocardia_86x

partial RP 15 / 55 MC: 1 BSCG 14 / 51 MC: 2 ASCG 7 / 38 MC: 1
Location: 19040..19894

Top 3 Functional Annotations

Value Algorithm Source
Ribulose bisphosphate carboxylase large chain n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CJ77_PSEUX similarity UNIREF
DB: UNIREF100
  • Identity: 74.5
  • Coverage: 274.0
  • Bit_score: 389
  • Evalue 2.80e-105
ribulose bisphosphate carboxylase large chain similarity KEGG
DB: KEGG
  • Identity: 74.5
  • Coverage: 274.0
  • Bit_score: 389
  • Evalue 7.80e-106
Ribulose bisphosphate carboxylase large chain {ECO:0000313|EMBL:AEA23927.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonoca similarity UNIPROT
DB: UniProtKB
  • Identity: 74.5
  • Coverage: 274.0
  • Bit_score: 389
  • Evalue 3.90e-105

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Notes

Probably not RuBisCO. No conserved domains detected. Rose Kantor (4/23/14)

Taxonomy

Pseudonocardia dioxanivorans → Pseudonocardia → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 855
ATGATCGCCCCGGGCGGGCGCCGACCGTGCCGGATGGGCCATGATGCGCTCATGGTCGTGCGCATCGCCGGACTCCCCGTCCTCGGACCGTCCGACGTCCTCGCCGGGGCCCGTGCGGTCGCCGGCTGGACCGAGGACGCGGTCGGCCTCGCCGGCGAGCTTCCCGAGCGCGCGGGGCGGCTACTCGACGGCGCGGAGACGCTCGTCGGGCGCATCAGCGGCATCGCCGACCGCGTCGACGGACTGCTCGACCGGGTCGACGGCAGCGTCGACTCCGTCGAGGCGACGCTGTCGGAGGTGAGCGGCGTCGTCGCGCGGACCTCGACGGTCGTCGCCGTGGCCGAGAAGCTCGTGTCGACCGTCGGCGGGGTCGCCGAGCAGGCCGAGCAGATCGTCCGCACCGCGGGCGGGGTGGCGACCGAGGCGGCTACGGTCGTCGGTGCGGCGCAAGGGGTTGCGCAGCAGGCGGGCGAGGTCGTCGACGGTGCAGCCCTCGTCGCGCGACGGGCCGGCGAGATCGTCGAGTCGGCGAGCGCGACCTCGGACGGCGCGAAGGCCGTGCTCGACACCTGGAAGCCGGTGTCGGACCGGGCCGCGCCGCTGGCGCGCAAGTTCGTGGAGGAGCTCTCCGAGGACGAGGTGCGGGCCGCGATCCGGCTGGTCGACCACCTGCCGCAGCTCACCGAGCACCTCGAGAACGACATCATGCCGATCCTGTCGACGCTCGACCGCGTCGGACCCGACGTCCACGAACTGCTCGATGTCCTCAAGGAGGTCCGGCAGGCGATCCTCGGCATCCCCGGGTTCGCGTTCTTCCGCCGTCGCGGCGTGGAGAAGGCCGAAGAGGAGTCGTGA
PROTEIN sequence
Length: 285
MIAPGGRRPCRMGHDALMVVRIAGLPVLGPSDVLAGARAVAGWTEDAVGLAGELPERAGRLLDGAETLVGRISGIADRVDGLLDRVDGSVDSVEATLSEVSGVVARTSTVVAVAEKLVSTVGGVAEQAEQIVRTAGGVATEAATVVGAAQGVAQQAGEVVDGAALVARRAGEIVESASATSDGAKAVLDTWKPVSDRAAPLARKFVEELSEDEVRAAIRLVDHLPQLTEHLENDIMPILSTLDRVGPDVHELLDVLKEVRQAILGIPGFAFFRRRGVEKAEEES*