ggKbase home page

cn_combo_scaffold_3996_3

Organism: CN-SCN_Pseudonocardia_86x

partial RP 15 / 55 MC: 1 BSCG 14 / 51 MC: 2 ASCG 7 / 38 MC: 1
Location: comp(2218..5154)

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, winged helix family n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CT85_PSEUX similarity UNIREF
DB: UNIREF100
  • Identity: 80.6
  • Coverage: 990.0
  • Bit_score: 1522
  • Evalue 0.0
Transcriptional regulator, winged helix family {ECO:0000313|EMBL:AEA26303.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonoc similarity UNIPROT
DB: UniProtKB
  • Identity: 80.5
  • Coverage: 990.0
  • Bit_score: 1520
  • Evalue 0.0
winged helix family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 80.5
  • Coverage: 990.0
  • Bit_score: 1520
  • Evalue 0.0
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pseudonocardia dioxanivorans → Pseudonocardia → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 2937
GTGCAGTTCGGCATCCTCGGACCGCTGCAGGTCCGGACCTCCTCCGGTGAGGTCGTCGCCGTCGGCGGCCCCCGCCCCCGGGCGCTGCTGACGATGCTGCTGCTGCAGGCGGGCCGGGTCGTGAGCGTGGACGCGCTGGTCGACGGCCAGTACGACGACGACCTCCCCGCAGGCGCGGCGAACGCGGTGCAGGCGCAGGTGTCGCGGCTGCGGCGGGCGCTGCCGCCGGAGACGGTCGAGTTCACGGGCGGCGGGTACCGGATCAACGCCGAGCCCGACGACGTCGACGCCCTGCGCTTCACCCGACTCGCCGCGACGGGCCGACGGCTGGTCCGCGACGGGCGCGCCGCCGACGCCGCTGCGGTCCTGCGCGAGGCCCTCGCGTTGTGGCGCGGACCCGCGCTGCCCGACCTCCCGCCCGGCCCCGACACGACGCGGCTCGACGGGCTGCGCCTCGACGCCCGGGAGGACCTCGCCGAGGCCGAGCTGGCGCTGCCGGACGGCACGTCCGTCGCGACCCTGGAGGCTCTCGCCTCGGAGCACCCGTTGCGGGAACGCCTGCGCGGCCTGCTGATGCGCGCCCTGCACGCGGCGGGACGCCCGGCGGAGGCGCTGGAGGAGTACGAGAAGGTGCGCAAGCTGCTGCGCGCCGAGCTGGGGGCGGACCCGTCGCCGGAGCTGGCCGAGGTCCACACCGCGATCCTGCGGGCCGAGCACCCCGCCCCACCCCGGCGACGCACCGCTCCGGCGCAGCTCACGTCGTTCGTCGGACGCACCGCCGAGCTCGCTCGGCTCGCTGCGCTCGACGGCACCCGGCTCGTGACGATCCTCGGGCCCGGCGGCATGGGGAAGACGCGGCTGGCCGCCGAGTTCGCGGCCGGCGACGGCTGCTGGGTCGAGCTCGCCCCGCTCGGCCCGTCGGCCGACCGCGACGCCGTCGCCACCGCAGTCGTGGCAGCACTGGGTGTCCGTGACTCCCCCACCGACTCCACGTCGCCCCTCGGCCGGCTCGTCGCCGCGCTCGGCGGACGGCAGGACGTGCTGCTGGTGTTCGACAACTGCGAGCAGGTCGTCGGGGCGGCCGCCGCCGTCGCCCGCGAGGTGCTCGCGGCCTGCCCCGGAGTCAGGATCGTCGCCACCAGCCGCGAGCCGTTGGGGCTCACCGGCGAGACCCTGCTGCCCCTCACGCCGCTCCCCGACGCGGTCCGCCTCTTCGCCGAGCGCGCCGCCGCCGTCCAGCCGGGTTTCGTCGTCGACCCCACGAACGCTGCCGCCGTCGAGGCGATCTGCGCGGACCTCGACGGGTTGCCGCTCGCGATCGAACTGGCAGCTGCGCGGCTGCGGCAGTTCGGCGTCGACACGTTGGCGCGCAGGCTGTCGGAGCACGACCGGTTCCGGGTGCTCTCCCGCGGCGACCCCACCGCCGACGCCCGGCACCGCACGCTGGAGGCGGTCGTCGCGTGGAGCTGGGACCTGCTCGGCGACGAGGAGCAGACTCTGGCGCGCAGGTTCGCGATCTTCGCCGGCGGCGCGCCCGCGGAGGCGGTCGAGCCGGTGTGCGGGGTGCCCGAGGACGTCCTCGACGACCTCGTCGACCGCTCGTTGGTCGGGACCGACGGCGAGCGCTACCGCATGCTGGAGACGGTCCGGCTGTTCTGTCTGGCCCGGCTCGACGAGGCCGGTGAGTCCGACGCCACCGCCGCCGCCCATGCCGAGTACCACCTGCGACTGGCCCGCGAGGCCGACCCGGAGCTGCGCCGGGCCGACCAGCTGCAGTGGCTCGCGCAGCTCACGGCGGAGGACGCGAACCTCACCGCGGCGCTGCGCTGGTCCGCCGAGCACGACCGGAGGACGGCGTTCGCGCTGGTCGCAGCACTGGCGGCGTACTGGTGGCTGTCCGGCCGGCACGCCCGGCCCGGCCCGACCGCGGCAGCGCTCCTCCGGGACGGCGACCCGCCCGCAGGGATGGACGAGGAGTACGCGGCCGTCGTCGCCCATGCGGTTCCGCGGGCGGCGCCGGAGCACTGGGCGCGCGGCGAGGCGATCATGCGCACCCACGGTCGCGAGCTGCGGCACCCGTTCGGGGCGGCGCTGTGGGGCATGGCGGCGGGCCCACCCGCCGACGACCCGAACCCGCGGCTGATCGGCACGGACCCGTGGAGCCGCGCCCTCGACCAGCTCTCCGGAGGGCTGCTCGACCTGCTCGACGGCCGGACCGCCGACGGGACGCTTCTCGCGGCCCGGGACGCGTTCGCCGAGCTGGGCGAACGCTGGGGCTGGGCGCAGGCGCTGGACTGGCTGGCATTGATCGCGAGCCGCCGCGGCGAGTGGGCGCGGGCGCACGAGCTGTGGTCGGAGGCGCTGCGACTGCAGGACGAGCTGGGCGCGCTCGACGAGTGCGCCGAGGTGCTGTGCCACCGGGCGATGGGCCTGCTGCGCCGCGGCGACCTCGACGCCGCAGCCGCCGACGTCGCGCACGCCCGCGAGCTGTGGACCGCGGCCGGCCGGTCTCCGCTGCCCGAGGAGGCGTACCTCGCGGAGGCGGAGATCGCGATCGCCCGCGGCGACCTCCTCGCGGCCCGCGCGGCTCTGACGAACGCCGGCGAGGGAGCCGCCGCGCTGACGGCCCGGGGCCGGGTTGCCGACGACCCCGAGGGCGCCCGCCGCCTCCACACCGCGGCGCTCGACGCGGTACCCCCGCTGGCCGCCGAACGCGCCGACGCCCTCGAAGGCCTGGCATCCACGGTCGACGACCCCGAGCGCGCCGCGTTCCTGCTCGGCGTCGCCGTCGCACTCCGCGGCACGGCAGTGGTGGGCGACCCCCACGTCGCCCGGGTGGCCGCGAGAGCCCGCGACGCCCTCGGCCCCGACGCCTTCTCCGCGGCCTGGTCCCGCGGCGCCGCCCTCCCCCGCGCCGAGGCACTCCGCACTCTGTGA
PROTEIN sequence
Length: 979
VQFGILGPLQVRTSSGEVVAVGGPRPRALLTMLLLQAGRVVSVDALVDGQYDDDLPAGAANAVQAQVSRLRRALPPETVEFTGGGYRINAEPDDVDALRFTRLAATGRRLVRDGRAADAAAVLREALALWRGPALPDLPPGPDTTRLDGLRLDAREDLAEAELALPDGTSVATLEALASEHPLRERLRGLLMRALHAAGRPAEALEEYEKVRKLLRAELGADPSPELAEVHTAILRAEHPAPPRRRTAPAQLTSFVGRTAELARLAALDGTRLVTILGPGGMGKTRLAAEFAAGDGCWVELAPLGPSADRDAVATAVVAALGVRDSPTDSTSPLGRLVAALGGRQDVLLVFDNCEQVVGAAAAVAREVLAACPGVRIVATSREPLGLTGETLLPLTPLPDAVRLFAERAAAVQPGFVVDPTNAAAVEAICADLDGLPLAIELAAARLRQFGVDTLARRLSEHDRFRVLSRGDPTADARHRTLEAVVAWSWDLLGDEEQTLARRFAIFAGGAPAEAVEPVCGVPEDVLDDLVDRSLVGTDGERYRMLETVRLFCLARLDEAGESDATAAAHAEYHLRLAREADPELRRADQLQWLAQLTAEDANLTAALRWSAEHDRRTAFALVAALAAYWWLSGRHARPGPTAAALLRDGDPPAGMDEEYAAVVAHAVPRAAPEHWARGEAIMRTHGRELRHPFGAALWGMAAGPPADDPNPRLIGTDPWSRALDQLSGGLLDLLDGRTADGTLLAARDAFAELGERWGWAQALDWLALIASRRGEWARAHELWSEALRLQDELGALDECAEVLCHRAMGLLRRGDLDAAAADVAHARELWTAAGRSPLPEEAYLAEAEIAIARGDLLAARAALTNAGEGAAALTARGRVADDPEGARRLHTAALDAVPPLAAERADALEGLASTVDDPERAAFLLGVAVALRGTAVVGDPHVARVAARARDALGPDAFSAAWSRGAALPRAEALRTL*