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cn_combo_scaffold_29_2

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: 529..1245

Top 3 Functional Annotations

Value Algorithm Source
Two component transcriptional regulator, winged helix family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V3E8_VARPE similarity UNIREF
DB: UNIREF100
  • Identity: 81.8
  • Coverage: 231.0
  • Bit_score: 381
  • Evalue 6.30e-103
Variovorax paradoxus strain MEDvA23 contig_67, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ25629.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona similarity UNIPROT
DB: UniProtKB
  • Identity: 82.7
  • Coverage: 231.0
  • Bit_score: 383
  • Evalue 1.80e-103
winged helix family two component transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 81.8
  • Coverage: 231.0
  • Bit_score: 381
  • Evalue 1.80e-103

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 717
ATGCGTATTGCTGTACTCGACGACGGCCCGGACCAACGCAGGCTGATCAACCAAACCATGGTGGCGCTGGGGCACGAGTGCCACACGTTCACCGCAGGAAGGACGCTGCTGCAGTCATTGCGCCGGCAAACCTTCGATCTGCTCATACTCGACTGGCATCTGCCCGACATGGCGGGCCCCGACGTGGTGAAGACCATCCGGCTCGAGCTGAAGAGCCGGCTTCCCATCCTCTTCGTGACAGACCGTCGCGACGAGGACGACATGGTCGAGGGGCTCAACGCCGGCGCCGACGACTTCATGGCCAGGCCCATACGGGCGGGCGAACTCGAAGCCCGCGTCAACGCGCTGTTCCGCCGCTCCTACCCCGGCCGCCAAGAGGCCGAAATGGTGTTCGGGCCCTATCACTTCTACCCGCCTTCACGAACGCTGAAAGTCCGGGGCACCCCGGTCGAACTGAAGAACCGCGAGTACGAACTGGCGCTGTTCCTGTTCCAGAACCTCGGGCGGCTGCTGTCGCGCGAGCACCTGCACGAAGCCGTGTGGGGGCTGGGCATCGAGGCGCTGTCGCGTTCGCTCGACACGCACGTCTCGCGCCTGCGAACCAAGCTTGACCTGCGCCCCGCCAATGGCTTCCTGCTGCTGGCCATCTACGGACTGGGCTACCGGCTGGAGACGATCGACGAGAACACCATGCTCAAGGTCGGCAACATGCGCTGA
PROTEIN sequence
Length: 239
MRIAVLDDGPDQRRLINQTMVALGHECHTFTAGRTLLQSLRRQTFDLLILDWHLPDMAGPDVVKTIRLELKSRLPILFVTDRRDEDDMVEGLNAGADDFMARPIRAGELEARVNALFRRSYPGRQEAEMVFGPYHFYPPSRTLKVRGTPVELKNREYELALFLFQNLGRLLSREHLHEAVWGLGIEALSRSLDTHVSRLRTKLDLRPANGFLLLAIYGLGYRLETIDENTMLKVGNMR*