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cn_combo_scaffold_120_20

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: 21382..21924

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Variovorax sp. CF313 RepID=J3CF24_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 88.3
  • Coverage: 180.0
  • Bit_score: 309
  • Evalue 2.30e-81
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EJL70101.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source=" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.8
  • Coverage: 180.0
  • Bit_score: 307
  • Evalue 9.40e-81
RNA polymerase, sigma-24 subunit, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 78.4
  • Coverage: 176.0
  • Bit_score: 274
  • Evalue 1.80e-71

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Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 543
GTGGCCGCCGGGATCGATCGCACCGATTTGATCTGCGCCGCGCAGACCGGCGACCCCGCGGCCATCGCCGGGCTGCTGGCGGTCTGCCAGGCCGACGCGCGCCGCTATGCCCGCAGGCACTGCCAGGCCAGCGACATCGACGATGCCGTGCAGGAATCGTTGATGGTGATCGTGCGCAAGGTCCGGGGCCTGAAGGCGGCCGCGGCTTTTTCGTCGTGGCTGTTCACGGTCATCAAGCGCGAATGCCTGCGGCTGCAGCGCGCGATGTTCCGGCACGACCCGCTGGACGACGAAGTGGCCGAGCGGCAGCTTGCCAGCCGCACCGACGACGCGCTGCGGCTGGACCTGACGCACGCGCTGGAGTCATTGCCCGCGCACTACCTCGAAGTGGTGCTGCTGCGCGATTTCGAGGAGCTGACCATCGCGGAGATCGCCCAGCGGCTCGGCGAGCCCGCGGGTGCCGTCAAGAGCAGGCTGCACCGCGCGCGGATGCTGGTGCGCGAATACCTGCTGGAGGGCGATGCGACAATCGTCCGGCCATGA
PROTEIN sequence
Length: 181
VAAGIDRTDLICAAQTGDPAAIAGLLAVCQADARRYARRHCQASDIDDAVQESLMVIVRKVRGLKAAAAFSSWLFTVIKRECLRLQRAMFRHDPLDDEVAERQLASRTDDALRLDLTHALESLPAHYLEVVLLRDFEELTIAEIAQRLGEPAGAVKSRLHRARMLVREYLLEGDATIVRP*