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cn_combo_scaffold_112_6

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: comp(4636..5253)

Top 3 Functional Annotations

Value Algorithm Source
Regulatory protein TetR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V075_VARPE similarity UNIREF
DB: UNIREF100
  • Identity: 85.7
  • Coverage: 203.0
  • Bit_score: 342
  • Evalue 2.10e-91
Variovorax paradoxus strain MEDvA23 contig_74, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ24254.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona similarity UNIPROT
DB: UniProtKB
  • Identity: 86.5
  • Coverage: 207.0
  • Bit_score: 347
  • Evalue 9.30e-93
TetR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 85.7
  • Coverage: 203.0
  • Bit_score: 342
  • Evalue 6.00e-92

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 618
ATGAATGCCGTTTCCCCCGCCAAGACCTCGTTCAAGGAGCAGATGCTGCAGGCCCGCGAGGAGGCCATCGTGCAGACCGCGAACCGGTTGCTGGCCGAAAAAGGCTTCGAGTCGATGACGGTCGACGAGGTGGCCGCCGCGGTCGGCATTGCCAAGGCCAGCCTCTACAAGCACTTTCCCAGCAAGGAAGACCTGGCCGCCGCGGCCATGGTGCGCATCATGCAGCGCACCCTCGAATTCCTGGCTTCGGTGCCGCCCGAGGACAAACCCGTCGCCAAGCTGCGCGCCGTGGTGCGATGGTCGATGCAGGTGCAACTGGCCGGCGAGATGCCGTCGCTGCCGCACCAGAACTCGACTCTTCGCGCCGCGTTGATGAACAACCGCGCCTACCTCGACCGCCTGGTCACGATCAGCGACCAGCTCGGCGGCTGGATCCAGGCCGCGCAGGCCGACGGTTCGCTGAACCCGAAGCTGCCGGCCATCGCCGTGCTCTACACGCTGTTCGCGCGCGCTTGCGATCCGGTGCTGGGTTTCCTCAAGGCCGGCGGACTGCAGACCGACGAGCAGATCGTCGAGCTGGTGCTCGCCACCTGCTTCGAGGGGCTGGCCTCGCGATGA
PROTEIN sequence
Length: 206
MNAVSPAKTSFKEQMLQAREEAIVQTANRLLAEKGFESMTVDEVAAAVGIAKASLYKHFPSKEDLAAAAMVRIMQRTLEFLASVPPEDKPVAKLRAVVRWSMQVQLAGEMPSLPHQNSTLRAALMNNRAYLDRLVTISDQLGGWIQAAQADGSLNPKLPAIAVLYTLFARACDPVLGFLKAGGLQTDEQIVELVLATCFEGLASR*