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cn_combo_scaffold_112_7

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: comp(5340..6074)

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2JML4_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 97.1
  • Coverage: 244.0
  • Bit_score: 468
  • Evalue 4.00e-129
Variovorax paradoxus strain MEDvA23 contig_74, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ24253.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona similarity UNIPROT
DB: UniProtKB
  • Identity: 97.5
  • Coverage: 244.0
  • Bit_score: 471
  • Evalue 6.70e-130
GntR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 96.7
  • Coverage: 244.0
  • Bit_score: 467
  • Evalue 2.50e-129

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 735
ATGGACTCCCAACAATCCCGCGTGCTCGTGCAGCTGCGCGACATGATTCTCAAGGGCGAATTCGTGCCCGGAGAGCGGCTGGCCGAGATCCCGCTGGCCGAGAAGCTCGAGGCCTCGCGCACCCCGGTGCGGCTGGCGCTGGCCAGCCTGGAGCACGAAGGGCTGATCGAGCAGTCGCCCTCCGGCGGCTACCAGATGCGCCGCTTCACCTCGCAGGAGGTGGCCGATGCCATCCGCGTGCGCGGCGTGATCGAAGGCTTCGCGGCCCGCCTGCTGGCCGAGGACGGCGCGCCGCGCCAACTGCTGCGCGACCTGAAGGACTGCCTCGATGCCGGCGACCGCGCGGTCAACAAGCCCAGCATGGACCTGGATGACTACGCGGCCTACGTCGAGATGAACGACCGCTTCCACAAGCTGATCCTCGAAGGCTGCGGCAACCTCGCGCTCAAGCGGGTGATGGACATGCTCGGCGGCCAGCCCTTCGCGGCGCCGAGCGCGATGCTGCCGATGCAGTCGTCGATGGAAGAGGGCCAGCAGTGGATGCGCCAGGCGCACCGCACGCACCACGCGATGGTGCAGGCCATCGAGCGCGGGCAGGGCTCGCGGGCTCAGGCGCTGGGCGAGGAGCACGTCGAAATCGCGCGCATGAATCTCGACTACGCCCTGGAGCGGCCCGAGCTGGCGGCCGAGCTGATGCCCGGGATCCGGCTCGTCTCCAAGGGGCGCAGCACGTGA
PROTEIN sequence
Length: 245
MDSQQSRVLVQLRDMILKGEFVPGERLAEIPLAEKLEASRTPVRLALASLEHEGLIEQSPSGGYQMRRFTSQEVADAIRVRGVIEGFAARLLAEDGAPRQLLRDLKDCLDAGDRAVNKPSMDLDDYAAYVEMNDRFHKLILEGCGNLALKRVMDMLGGQPFAAPSAMLPMQSSMEEGQQWMRQAHRTHHAMVQAIERGQGSRAQALGEEHVEIARMNLDYALERPELAAELMPGIRLVSKGRST*