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cn_combo_scaffold_171_5

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: comp(5963..7456)

Top 3 Functional Annotations

Value Algorithm Source
NusA antitermination factor n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V4V4_VARPE similarity UNIREF
DB: UNIREF100
  • Identity: 98.0
  • Coverage: 497.0
  • Bit_score: 937
  • Evalue 6.20e-270
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax similarity UNIPROT
DB: UniProtKB
  • Identity: 98.2
  • Coverage: 497.0
  • Bit_score: 938
  • Evalue 3.90e-270
nusa antitermination factor similarity KEGG
DB: KEGG
  • Identity: 98.0
  • Coverage: 497.0
  • Bit_score: 937
  • Evalue 1.80e-270

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1494
ATGAATCGCGAAATGTTGATGTTGGTGGATGCGATCTCGCGCGAGAAGAACGTCGAGCGTGACGTCGTTTTTGGCGCGGTCGAGTCCGCGCTGGCGCAAGCCACCAAGAAGCTCCATCAGGGCGACGTGGACATCCGCGTCTCGGTCGACCGCGACAGCGGCGACTACGAAACCTTCCGCCGCTGGCACGTCGTTCCGGACGAAGCCGGCCTGCAGCTGCCCGACCAGGAAATCCTGCTTTTCGAAGCCAAGGAAGAAATGTCGGACATCGAGGTCGGCGAGTACATCGAGGAAGCGGTCGAGTCGGTGCCGATCGGCCGTATCGGTGCCATGGCTGCCAAGCAGGTCATCCTGCAGAAGATCCGCGACGCCGAGCGCGAGATGCTGCTCAACGACTTCATGTCGCGCGGGGACAAGATCTTCGTGGGCACCGTCAAGCGCCTGGACAAGGGTGACATCATCGTCGAGGCCGGCCGTGTCGAAGGCCGCCTGCGTCGCAGCGAGATGATCGCCAAGGAAAACCTGCGCAATGGCGACCGCGTGCGCGCCATGATCATGGAAGTCGACCTGACGCTGCGCGGCGCGCCGATCATCCTGTCGCGCTCGGCTCCCGAGTTCATGATCGAGCTGTTCCGCCAGGAAGTGCCTGAAATCGAGCAGGGCCTGCTCGAAATCAAGAGCTGCGCCCGCGACCCGGGTTCGCGCGCCAAGATCGCCGTGCTCTCGCACGACAAGCGCGTCGACCCGATCGGCACCTGCGTCGGCGTGCGCGGCACCCGAGTGAACGCCGTGACCAACGAACTCGCCGGCGAGCGCGTGGACATCGTTCTATGGAGCGAAGACCCGGCCCAGTTCGTGATCGGTGCCCTGGCGCCCGCCAACGTGTCGTCGATCGTGGTCGATGAAGAAAAGCACGCCATGGACGTGGTGGTCGACGAGGAAAACCTCGCCATCGCCATCGGCCGTGGCGGCCAGAACGTGCGCCTGGCTTCCGACCTCACCGGTTGGAAGATCAACATCATGGACGCCAACGAGTCGGCCCAGAAGCAGGCGACCGAGACCGACGCCAGCCGCAAGCTCTTCATGGAAAAGCTCGACGTCGACGAGGAAATCGCCGACATCCTGATCTCCGAAGGCTTCAACAGCCTCGAGGAAGTCGCATACGTGCCGATTTCCGAAATGCTGGAGATCGAGGCTTTCGACGAAGACACCATCAACGAGCTGCGCTCGCGTGCCAAGGATGCGCTGCTGACCATGGAAATCGCCAAGGAAGAGGGCGTCGAGGGTGCGCCGCAGGTCTCGCAAGACCTGCACGACCTCGAAGGGCTCGACCCCGAGCTGATTCCCAAGCTGGTCGAAGCGGGTGTGAACACCCGTGACGATCTTGCCGACCTCGCGGTCGATGAACTCACCGAGATCACCGGCCACAGCGCCGATGACGCCAAAGCCCTCATCTTGAAAGCCCGCGAACATTGGTTCGCCGGCCAAGAGTGA
PROTEIN sequence
Length: 498
MNREMLMLVDAISREKNVERDVVFGAVESALAQATKKLHQGDVDIRVSVDRDSGDYETFRRWHVVPDEAGLQLPDQEILLFEAKEEMSDIEVGEYIEEAVESVPIGRIGAMAAKQVILQKIRDAEREMLLNDFMSRGDKIFVGTVKRLDKGDIIVEAGRVEGRLRRSEMIAKENLRNGDRVRAMIMEVDLTLRGAPIILSRSAPEFMIELFRQEVPEIEQGLLEIKSCARDPGSRAKIAVLSHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDANESAQKQATETDASRKLFMEKLDVDEEIADILISEGFNSLEEVAYVPISEMLEIEAFDEDTINELRSRAKDALLTMEIAKEEGVEGAPQVSQDLHDLEGLDPELIPKLVEAGVNTRDDLADLAVDELTEITGHSADDAKALILKAREHWFAGQE*