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cn_combo_scaffold_171_14

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: comp(17015..19321)

Top 3 Functional Annotations

Value Algorithm Source
Lysine decarboxylase {ECO:0000313|EMBL:ACS19360.1}; EC=4.1.1.18 {ECO:0000313|EMBL:ACS19360.1};; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Var similarity UNIPROT
DB: UniProtKB
  • Identity: 97.9
  • Coverage: 768.0
  • Bit_score: 1528
  • Evalue 0.0
Lysine decarboxylase (EC:4.1.1.18) similarity KEGG
DB: KEGG
  • Identity: 97.9
  • Coverage: 768.0
  • Bit_score: 1528
  • Evalue 0.0
lysine decarboxylase n=1 Tax=Variovorax paradoxus RepID=UPI000364292F similarity UNIREF
DB: UNIREF100
  • Identity: 97.5
  • Coverage: 767.0
  • Bit_score: 1529
  • Evalue 0.0

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2307
ATGAAATTCCGCTTTCCCATCGTCATCATCGACGAGGACTTCCGCTCCGAAAACACTTCGGGCCTCGGCATCCGCGCGCTCGCGCAGGCCATCGAGACGGAGGGCTTCGAGGTGCTGGGCGTCACGAGTTATGGCGACCTGAGCCAGTTCGCCCAGCAGCAAAGCCGCGCCAGCGCCTTCATTCTGTCGATCGACGATGAAGAATTCACCGTCGGCCCCGACCTCGATCCGGCCGTGCTGAGCCTGCGCAACTTCATCGGCGAGGTGCGCCGCAAGAACGCCGATGTGCCGATCTACATCTACGGCGAGACCAAGACCTCGCGCCACATCCCGAACGACATCCTGCGCGAGCTGCACGGCTTCATCCACATGTTCGAGGACACCCCCGAATTCGTGGCGCGCCACATCATCCGCGAGGCCAAGAGCTATCTCGAAGGCGTGCAGCCGCCGTTCTTCAAGGCGCTGATCGACTACGCGGAAGACGGTTCCTACTCCTGGCATTGCCCCGGCCATTCGGGCGGCGTGGCGTTCCTGAAGAGCCCGGTGGGCCAGATGTTCCACCAGTTCTTCGGCGAAAACATGCTGCGCGCCGACGTCTGCAACGCCGTGGAAGAACTGGGCCAGCTGCTCGACCACACCGGCCCGGTGGCCGCCAGCGAGCGCAACGCGGCGCGCATCTTCAATGCCGACCACTGCTTCTTCGTGACCAACGGCACCAGCACCAGCAACAAGATGGTCTGGCACCACACCGTGGCGCCCGACGACGTGGTGGTGGTCGACCGCAACTGCCACAAGTCGATCCTGCACGCGATCATCATGACCGGCGCGATTCCGGTGTTCATGAAGCCGACGCGCAACCACTTCGGCATCATCGGCCCGATTCCGAAGAGCGAGTTCGAGCAGAGCGCCATCAAGGCCAAGATCAAGGCCAACCCGCTGCTGGCCGATGTCGATGCCGACAAGGTCAAGCCGCGCGTGATGACGCTCACGCAGTCGACCTACGACGGCGTGATCTACAACACCGAGACCATCAAGAACATGCTCGACGGCTACGTCGACACGTTGCATTTCGACGAAGCCTGGCTGCCGCACGCCGCCTTCCACCCGTTCTACGGCGCCTACCACGCGATGGGCAAGCGCCGCGTGCGCCCGAAGGAGTCGCTGGTGTTCGCCACCCAGTCCACGCACAAGCTGCTCGCCGGCATCAGCCAGGCCAGCCACGTGCTGGTGCAGGACTCGCAGAACCGTCAGCTCGACCGCGACCTCTTCAACGAGGCCTACCTGATGCACTCGTCGACCAGCCCGCAGTACGCGATCATCGCGAGCTGCGACGTGGCCGCCGCCATGATGGAGCCGCCCGGCGGCACCGCGCTGGTGGAAGAAAGCATCCTGGAGGCGCTGGACTTCCGCCGCGCCATGCGCAAGGTCGAGGAAGAATTCGGCAAGGACGAGTGGTGGTTCAAGGTCTGGGGCCCCGAGAAGCTCGTCGACGAAGGCATCGGCCGCGCCGAAGACTGGATCATGCACGGCGAGAAGAACGGCCCGTCCAAGAGCAAGAGCAAGAAGTCGCCGCGCAACTGGCACGGCTTCGGCGAACTGGCCGACGGCTTCAACATGCTCGACCCGATCAAGTCGACCATCGTGACGCCGGGCCTCGACCTCGAAGGCAACTTTGCCGAGACCGGCATTCCTGCCAGCGTGGTCACCAAGTTCCTCGCGGAACACGGCGTGATCGTGGAGAAGACGGGCCTGTACAGCTTCTTCATCATGTTCACCATCGGCATCACCAAGGGCCGCTGGAACACGCTGCTCACGGCGCTGCAGCAGTTCAAGGACGACTACGCGCGCAACCAGCCGATGTGGCGCATCCTGCCGGAGTTCTGCCAGCAGCACCCGGGCTACGAGCGCCTCGGCTTGCGCGACCTGTGCCAGCACATCCACCAGCTGTATGCGCGCTACGACGTGGCGCGCCTCACGACCGAGATGTACCTGAGCGACCTGACGCCGGCCATGAAGCCCAGCGACGCCTTCGCCCATATCGCGCACCGCAAGACCGAGCGCGTGGAGATCGACGAGCTCGAAGGCCGCATCACCACCAGCCTGATCACGCCGTACCCGCCGGGCATTCCGCTGCTGATTCCGGGCGAAGTGTTCAACAAGAAGATCGTCGACTACCTCAAGTTCTCGCGCGAGTTCAACCTGCAGTGCCCGGGTTTCGAGACCGACATCCACGGCTTGGTGGCGCGCGTCGACGAAACGGGCAAGAAGCGCTACTACGCTGACTGCGTGCGCCAGACGGCCAAGTAA
PROTEIN sequence
Length: 769
MKFRFPIVIIDEDFRSENTSGLGIRALAQAIETEGFEVLGVTSYGDLSQFAQQQSRASAFILSIDDEEFTVGPDLDPAVLSLRNFIGEVRRKNADVPIYIYGETKTSRHIPNDILRELHGFIHMFEDTPEFVARHIIREAKSYLEGVQPPFFKALIDYAEDGSYSWHCPGHSGGVAFLKSPVGQMFHQFFGENMLRADVCNAVEELGQLLDHTGPVAASERNAARIFNADHCFFVTNGTSTSNKMVWHHTVAPDDVVVVDRNCHKSILHAIIMTGAIPVFMKPTRNHFGIIGPIPKSEFEQSAIKAKIKANPLLADVDADKVKPRVMTLTQSTYDGVIYNTETIKNMLDGYVDTLHFDEAWLPHAAFHPFYGAYHAMGKRRVRPKESLVFATQSTHKLLAGISQASHVLVQDSQNRQLDRDLFNEAYLMHSSTSPQYAIIASCDVAAAMMEPPGGTALVEESILEALDFRRAMRKVEEEFGKDEWWFKVWGPEKLVDEGIGRAEDWIMHGEKNGPSKSKSKKSPRNWHGFGELADGFNMLDPIKSTIVTPGLDLEGNFAETGIPASVVTKFLAEHGVIVEKTGLYSFFIMFTIGITKGRWNTLLTALQQFKDDYARNQPMWRILPEFCQQHPGYERLGLRDLCQHIHQLYARYDVARLTTEMYLSDLTPAMKPSDAFAHIAHRKTERVEIDELEGRITTSLITPYPPGIPLLIPGEVFNKKIVDYLKFSREFNLQCPGFETDIHGLVARVDETGKKRYYADCVRQTAK*