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cn_combo_scaffold_171_19

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: comp(22151..23368)

Top 3 Functional Annotations

Value Algorithm Source
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00036CA28A similarity UNIREF
DB: UNIREF100
  • Identity: 98.5
  • Coverage: 405.0
  • Bit_score: 780
  • Evalue 6.10e-223
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EJL76588.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkho similarity UNIPROT
DB: UniProtKB
  • Identity: 96.5
  • Coverage: 405.0
  • Bit_score: 771
  • Evalue 5.20e-220
extracellular ligand-binding receptor similarity KEGG
DB: KEGG
  • Identity: 94.1
  • Coverage: 405.0
  • Bit_score: 753
  • Evalue 3.80e-215
  • rbh

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Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1218
ATGCAATTGAAATGGACTGCGGTCGCACTGGCTGCAATCACGCTTGTGGCTTGCGGCAAGAAAGAAGAAGCCGCTGCTCCCGCTGCAGCGCCCGCGCCAACGGCCGCGGCCCCGGCTGCCGCGCCTGCACCTGCACCTGCCGGGGACACGCTGGTCGTCAAGATCGGTCACGTTGCACCTACCAGCGGTCCCATTGCCCACTTGGGCAAGGACAACGAAATGGGCGCCAAGATGGCCATCGAAGACCTGAATGCCAAGGGCATCAAGATCGGCGACAAGACCGCCAAGTTCGAGCTGGTCGCCGAAGACGACGCAGGCGATCCGAAGCAAGGCACCGCAGTGGCCCAGAAGCTCGTCGACGAAAAGGTCAACGGCGTGGTCGGCCACCTGAACTCGGGCACCACCATCCCCGCTTCCAAGCTGTACAGCGACGCTGGCATTCCCCAGATCTCGCCTTCGGCCACGAATCCCAAGTACACGCGTCAAGGCTTCAAGACCACGTTCCGCGTGGTGGCTGACGACACGCAACTCGGCGGTACGCTGGGCAAGTACGCAGTCGAAACGCTCAAGGGCAAGAACATTGCCGTGATCGACGACCGTACGGCTTACGGCCAAGGCGTTGCCGAAGAATTCGAGAAGTCGGCCAAGGCCGCCGGCGCCACCATCGTGGGCCACGAATTCACCACTGACAAGTCGACCGACTTCAACGCCATCCTGACCAAGCTCAAGTCGGCCAAGCCCGACGTGCTGTTCTTCGGCGGCATGGACGCCGTGGGCGGCCCGATGCTCAAGCAGGTCAAGCAACTCGGCCTGAACGTCAAGTTCATGGGTGGCGACGGCCTGTGCACCGGCGAACTGCCGAAGCTGGCTGGCGATGCCATCGGCGAAGACATGGTGGTGTGCGCTGAAGCCGGCGGCGTGGACGGCGACTTCAAGCAACCTCTGGAAGACTTCAAGGCCAAGTTCAAGACCAAGAACGGCGTGGAAGTGCAGATCTATGCACCGTACGTGTACGACGCGGTCAACGTGCTGGCTGAAGCCATGGTCAAGGCCGGCTCGTCCGACCCCGAAAAGTACCTGCCGGAAGTCGGCAAGGTGCAATACAAGGGCGTGACCGGCCCGATCGCCTTCGACGAAAAGGGCGACATCAAGAACGGCGCGCTGACGCTGTACACCTACAAGGGTGGTGCACGCACGCAAATCGCCGTGGTGCGTTGA
PROTEIN sequence
Length: 406
MQLKWTAVALAAITLVACGKKEEAAAPAAAPAPTAAAPAAAPAPAPAGDTLVVKIGHVAPTSGPIAHLGKDNEMGAKMAIEDLNAKGIKIGDKTAKFELVAEDDAGDPKQGTAVAQKLVDEKVNGVVGHLNSGTTIPASKLYSDAGIPQISPSATNPKYTRQGFKTTFRVVADDTQLGGTLGKYAVETLKGKNIAVIDDRTAYGQGVAEEFEKSAKAAGATIVGHEFTTDKSTDFNAILTKLKSAKPDVLFFGGMDAVGGPMLKQVKQLGLNVKFMGGDGLCTGELPKLAGDAIGEDMVVCAEAGGVDGDFKQPLEDFKAKFKTKNGVEVQIYAPYVYDAVNVLAEAMVKAGSSDPEKYLPEVGKVQYKGVTGPIAFDEKGDIKNGALTLYTYKGGARTQIAVVR*