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cn_combo_scaffold_180_5

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: comp(2486..3166)

Top 3 Functional Annotations

Value Algorithm Source
50S ribosomal protein L25 n=1 Tax=Variovorax sp. CF313 RepID=J3CL60_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 96.9
  • Coverage: 227.0
  • Bit_score: 428
  • Evalue 5.60e-117
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=1144315 s similarity UNIPROT
DB: UniProtKB
  • Identity: 96.9
  • Coverage: 227.0
  • Bit_score: 428
  • Evalue 7.80e-117
rplY; 50S ribosomal protein L25 similarity KEGG
DB: KEGG
  • Identity: 80.9
  • Coverage: 225.0
  • Bit_score: 347
  • Evalue 2.10e-93

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Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 681
ATGAAATTCGTCGCTTTTGAGCGCGCAAAGCAGGGCACGGGTGCGAGCCGCCGTCTCCGCATCTCGGGCAAGACCCCCGGCATCGTCTACGGTGGCGACACCCAGCCGCAACTGATCGAGATCGATCACAACGCGCTGTGGCACGCCCTCAAGAAGGAAGCCTTCCATGCGAGCGTGCTCGAGATGGAAATCGGCGGCGCCGTCAGCAAGGTTCTGCTGCGCGACGTGCAATACCACCCGTTCCGTCAGCTGGTGCAGCACGTCGACTTCCAGCGCGTCGATGCCAAGACCCGCATGACCATGAAGGTGCCCGTGCACTTCAAGGGTGAAGAAGAATCCGAAGCCGTCAAGATCGACCTGAACCTGGTCAATCACGTGACGACCGAACTCGAACTGAACTGCCTGCCGAGCGATCTGCCTGAGTTCATCGAAGTCGACCTGTCGGGCCTGAAGAAGAACGGCACCGTCACGCTGAAGGACATCAAGCTGCCCAAGGGCGTGAAGTGGGTCAGCCACGGCAAGGTCAACCCGGTGCTGGCTTCGGCCGTGTCGCCGGCGGCTGAAGAAGTCGACGCTCCCGCCGAAGGCGCTGCCGATGCAGCCGCCGCAGCCGCACCGGCCGGCAAGGGTGGCAAGGCTCCCGCCGCCAAGACCCCCGCCGCAAAGACTGCCAAGAAGTAA
PROTEIN sequence
Length: 227
MKFVAFERAKQGTGASRRLRISGKTPGIVYGGDTQPQLIEIDHNALWHALKKEAFHASVLEMEIGGAVSKVLLRDVQYHPFRQLVQHVDFQRVDAKTRMTMKVPVHFKGEEESEAVKIDLNLVNHVTTELELNCLPSDLPEFIEVDLSGLKKNGTVTLKDIKLPKGVKWVSHGKVNPVLASAVSPAAEEVDAPAEGAADAAAAAAPAGKGGKAPAAKTPAAKTAKK*