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cn_combo_scaffold_180_8

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: comp(5407..5943)

Top 3 Functional Annotations

Value Algorithm Source
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI00037E9FD1 similarity UNIREF
DB: UNIREF100
  • Identity: 83.7
  • Coverage: 178.0
  • Bit_score: 287
  • Evalue 7.10e-75
Outer-membrane lipoprotein LolB {ECO:0000256|SAAS:SAAS00002103}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax pa similarity UNIPROT
DB: UniProtKB
  • Identity: 81.5
  • Coverage: 178.0
  • Bit_score: 286
  • Evalue 2.90e-74
outer membrane lipoprotein lolb similarity KEGG
DB: KEGG
  • Identity: 82.6
  • Coverage: 172.0
  • Bit_score: 284
  • Evalue 2.20e-74

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 537
ATGAGACTGGCAGGGGCGCTTGCGCCGCAACAGATCGACCACGGGCGACGCGTGCTGCTGGCCGCAGGGGGCGCGGCGCTTCTTCTGGTGGCGGGCTGCGCTCAGCTGTCGGGCGGCGGCGCCTCGGCGCCCAAGACCTCGGACAGCTGGAGCGGCCGGATGTCGCTTCGCATCGAGAGCGAACCGGTGCAGACTTTTGCCGCGCTGTTCGAGCTGCGCGGCTCCGCCGATTCGGGCGATCTCACGCTCACCACCCCCATCGGCAGCACGCTCGCGCAACTGCACTGGTCGCCGGGCGAAGCACTGCTGAAGGACGGCAACAACACGCGGCGCTTCGACTCCGTCGACGCACTGATCGAAGCAGCCACCGGCGCGGCCATTCCGGTGGGCGCGCTGTTCGGCTGGCTCGCGGGCCGCAACGATCCCGTGCCCGGCTGGAAGCCCGACCTGGGGCAGCTCGCCAACGGCCGCCTGGCGGCGGTTCGCGAAGCGCCGAGCCCCCGGGCCGACCTGCGCATCGTGTTCGAGCGGTCATGA
PROTEIN sequence
Length: 179
MRLAGALAPQQIDHGRRVLLAAGGAALLLVAGCAQLSGGGASAPKTSDSWSGRMSLRIESEPVQTFAALFELRGSADSGDLTLTTPIGSTLAQLHWSPGEALLKDGNNTRRFDSVDALIEAATGAAIPVGALFGWLAGRNDPVPGWKPDLGQLANGRLAAVREAPSPRADLRIVFERS*