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cn_combo_scaffold_180_25

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: comp(26706..27671)

Top 3 Functional Annotations

Value Algorithm Source
LacI family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003787444 similarity UNIREF
DB: UNIREF100
  • Identity: 90.1
  • Coverage: 322.0
  • Bit_score: 573
  • Evalue 1.20e-160
Variovorax paradoxus strain MEDvA23 contig_110, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ19080.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamon similarity UNIPROT
DB: UniProtKB
  • Identity: 90.5
  • Coverage: 317.0
  • Bit_score: 577
  • Evalue 1.50e-161
putative Bug-like extracytoplasmic solute binding receptor,TTT family similarity KEGG
DB: KEGG
  • Identity: 89.3
  • Coverage: 317.0
  • Bit_score: 567
  • Evalue 3.10e-159
  • rbh

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 966
ATGAAGAACACAAGACGCGTCCTGAAGACGATCGCGGCCATCGCCGCCTGCGCGCCCCTGCTGGGCTGGGCCGCATGGCCCGACAAGCCGATCCGCATGGTCGTTCCCTATGCGGCGGGCGGCGGCGCGGACAACACCGCGCGGATCGTCGCGCAGCAACTGAGCGCGGCGCTGGGCCAGCAGATCGTCATCGACAACAGGCCCGGCGCGGGCGGCGTGATCGGCGCCGACAACGTGGCCAAGGCGGCTGCCGACGGCTACACCGTGCTGTACGACGCTTCTGCGTTCTCGGTGAATCCTTCGCTGCGCAAGCTGCCCTTCGACGCGGCCAAGGATTTCATTCCGGTGTCGCTGGTGGCCACCGCGCCGCAGATCCTGGTGGTGCCGGAGAACGCGCCCTACAAGACCGTCGCCGAGTTCCTGGACTTCGCGCGCAAGAACCCCGGCAAGCTGAGCTTCGCGTCGGCAGGCGGCGGCACCGGCTCGCACCTGGCGGGCGAGGCACTGAACGAACAGGCCAAGGTCAACCTGATGCACGTGCCCTACAAGGGCGGCGCACCGGCGCTCACCGACCTCATGGGCGGGCAGGTGTCGGCGTACTTCGGCAACGTGGCGTCCACCCTCAGCTACGTGAAGTCGGGCAAGCTGCGCGCCCTGGCCGTGAGTTCCACCAAGCGCGTGCCGGCCCTGCCCGACACGCCGACGCTCGGCGAGTCGGGCCTGCCGGGCTACAACGTGGTCGAGTGGAACGGCGTGTTCCTGCCCAAGGGCACGCCGGCCGACATCGTGCAGAAGCTAGGCAAGGCCGTGCAGGCGGCGATCAACGACCCCACTGTGCATCAGAAGCTGCTGCAGCTCGGCCTGGAACCCGCGGGCACCACGCCGGAGGCATTCGCCAGGTTCGTGCAGGACGAGATAGGCCGGGTGAGCGCGCTGGTACGGGCGCGCAACATCCGGGTCGACTGA
PROTEIN sequence
Length: 322
MKNTRRVLKTIAAIAACAPLLGWAAWPDKPIRMVVPYAAGGGADNTARIVAQQLSAALGQQIVIDNRPGAGGVIGADNVAKAAADGYTVLYDASAFSVNPSLRKLPFDAAKDFIPVSLVATAPQILVVPENAPYKTVAEFLDFARKNPGKLSFASAGGGTGSHLAGEALNEQAKVNLMHVPYKGGAPALTDLMGGQVSAYFGNVASTLSYVKSGKLRALAVSSTKRVPALPDTPTLGESGLPGYNVVEWNGVFLPKGTPADIVQKLGKAVQAAINDPTVHQKLLQLGLEPAGTTPEAFARFVQDEIGRVSALVRARNIRVD*