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cn_combo_scaffold_183_20

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: comp(20838..22055)

Top 3 Functional Annotations

Value Algorithm Source
Efflux transporter, RND family, MFP subunit n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T5K4_ACIDE similarity UNIREF
DB: UNIREF100
  • Identity: 56.9
  • Coverage: 413.0
  • Bit_score: 426
  • Evalue 2.90e-116
Cation efflux system protein CzcB {ECO:0000313|EMBL:EWS61988.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 59.1
  • Coverage: 411.0
  • Bit_score: 442
  • Evalue 5.50e-121
secretion protein HlyD similarity KEGG
DB: KEGG
  • Identity: 61.8
  • Coverage: 387.0
  • Bit_score: 433
  • Evalue 8.80e-119

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Taxonomy

Methylibium sp. T29-B → Methylibium → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1218
ATGAAATTCAATTCCGCCCTGGTCGATCAGCGCAGTACCGAACGTTCCGCTCTGACCAAGCTTGCCGCAGCGATCTGCGCGGCCTTTGCAGTGATCGCACTTTCCGGTTGCGGAGGCAGCAACGGTTCGGCCGAGAAGCCCGCTGTCGAAGAGAAGGCTGCCGAGAAAGAAGGCCTCAAGCTCTCGAAGGAGGAAGCGGATCGCGCTGGCATTGTCCTGGAAGAACTCAAGGCGCAAGCCCTGGCTGACACCGTCACGGTGACAGCGACGATTCGCGCGAACCAGGATCGCATTGCCAGGATTGCGCCTCGCGTCGAAGGCCGCGTTGCCACTGTTGCAGCAAGCCTTGGCGACAATGTTCGAACCGGACAGTCGCTCGCGACCCTGGACAGTTTGGCCGTTGGCGAGGCTTCGTCGGCGTTGAGCCAAGCACGGTCTGCTCAGCGAGTGGCTGACGCGGACTACAAGCGCGCCACTGCCTTGCAGGCAGAAGAGATCATTCCGCAGAAGGATTACCTGCGGGCCAAAGCCGAGCATGAAAAGGCAAGCGCGACGCTCCGCGCCGCGGAGGACCACCTTCGGCTGCTAGGCGTCCCATCGGGCCAGAGCGCAGGCGTGACCTCCGTGTTCCCGCTGACTTCGCCGTTGGCCGGCACGATCATCGAGAAAAAGGCCGTTGTGGGCGGCTTGGCCGGGCCCAGCGATGCCTTGTTCGTCGTCGCGGACCTGTCAACGCTGTGGATCGAGGCCAACCTGGCCGAGGCTCAGTTGGCGAAAGTCCGCGTCGGTGCGAAAGCGACCGTCACCGTCGGTGCCTATCCGGACGAGCGCTTCGAAGGACGAGTGACCTACGTTGCAAGCATCCTCGACAAGGAGACGCGTTCGATTCCGGCGCGCATCGAGGTGAAGAACGGTGAGGGTCGCCTCAAGCCTGAGATGTTCGCGACCGCCACCATTGAAAGCCCCTCGCCGCAGTCGGCGCCGAAGACGGACGTGCTGACGGTGCCGGACCAGGCCATCGTTCTCATGCAGGGGCAGCCCAACGTTTTCGTCTTTGAGAACGGTGCTTACGAGCAACGCGCCATCGATCCCGGCGACAGGCTCGGTACCCGGACGGTGGTGAAGTCAGGCGTGAAGGCCGGCGAGCAGGTGGTGAGCGCGGGAACCTACGCCCTCAAGGCACGCGTGCTGAAGTCGCAAATCGGCGACGCACATTGA
PROTEIN sequence
Length: 406
MKFNSALVDQRSTERSALTKLAAAICAAFAVIALSGCGGSNGSAEKPAVEEKAAEKEGLKLSKEEADRAGIVLEELKAQALADTVTVTATIRANQDRIARIAPRVEGRVATVAASLGDNVRTGQSLATLDSLAVGEASSALSQARSAQRVADADYKRATALQAEEIIPQKDYLRAKAEHEKASATLRAAEDHLRLLGVPSGQSAGVTSVFPLTSPLAGTIIEKKAVVGGLAGPSDALFVVADLSTLWIEANLAEAQLAKVRVGAKATVTVGAYPDERFEGRVTYVASILDKETRSIPARIEVKNGEGRLKPEMFATATIESPSPQSAPKTDVLTVPDQAIVLMQGQPNVFVFENGAYEQRAIDPGDRLGTRTVVKSGVKAGEQVVSAGTYALKARVLKSQIGDAH*