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cn_combo_scaffold_192_15

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: comp(21129..22274)

Top 3 Functional Annotations

Value Algorithm Source
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00035D46F0 similarity UNIREF
DB: UNIREF100
  • Identity: 90.0
  • Coverage: 381.0
  • Bit_score: 662
  • Evalue 2.30e-187
Variovorax paradoxus strain MEDvA23 contig_54, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27471.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona similarity UNIPROT
DB: UniProtKB
  • Identity: 88.7
  • Coverage: 382.0
  • Bit_score: 650
  • Evalue 1.60e-183
extracellular ligand-binding receptor similarity KEGG
DB: KEGG
  • Identity: 87.4
  • Coverage: 382.0
  • Bit_score: 639
  • Evalue 4.40e-181

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1146
ATGCACCGCAGAAACTTCATTGCCGCCTCGGCGGCCGCCGTGGCCGCGCCCGCGCTCGGCTTCATGTCTTCGGCCCGTGCCGCCGAGAGTGGCGTGACGGACACAGAAATCGTGCTCGGCCACACCGGCATCCTGAGCGGTCCGCTCGGGGCGCCGATCAAGGTGGTGGTGGCCGGCGCGGGGCTGGCTTTCGACGCTGTGAATGCGCAGGGCGGCCTGTCGGGCCGCAAGATCCGGCTGGTGTCGCTCGACGACGAGCTGGTGCCCGAGAAGGCGGTGGCCAACTACGAGAAGCTGCTCGGCGAACACCACGCCTTCGCTTTCTTCGGCTGCGTGGGCTCGGGCACCACCGCCGCGGCGGCCAAGGTGCTGAACCAGAGCGGCGCGCCGATGGTCGGCGGCTACGCGGTGTCCGATTCGGCGCGCGAGAAGGTGGCGGGCTCCGGCTACTTCGTGCGCGCCACCTTCGCGCGCGAGGCGCAGGCGCTGGTGCAGCACCTGACGACCATCGGCGTCTCGCGGATCGCGGTGGCCTATCTCGACAACCCCGGCGGCGCCGAGGTGGCGAAGCTGGTCGAGGCCGCGCTCTCCACGCTGCAGCTCAAGCCCGTGGCCGCCGTGCCGGTGAAGGGCGACGGCTCGGCCAACGAGGCCTCGGGCAAGGCGCTGGCGGACAGCAAGGCGCAGGCGGTGATCATGTACCTGGGCGGCGGCATCGGCGGCGAGGTGATGAAGAGCGCCTGGGCCGCGGGCGGGCGGCAGATGTTCTACGGCATGTCGATCGTGCCGGGCGACGTCACCGCGAAGCTGGTGGGCGACAAGACCAGCGGGCTCGCCATTTCGCAGATCGTGCCCTACCCGTGGAGCGAAGTGGACGCCGGCGCAAGAGAGTATCGGCAGCAGGCCGAGCGCGCCAAGGTCGACGTGGGCTATCTGAGCTACGAAGGCTACGTGAACGCGCTGGTGATGATCGAGGCGCTGCGCCGCACCGGGCGCGACCTGACGCGCGCCAAGCTGCACGCTACGCTCAAGGCGATGAAGCTGCGGGTAAACAACATGGAAATCGACTTCACCGGCGCCAGCAACACCGGCTCGCGCTTCATCGAGATGGTGCGGGTGACCAAGGAAGGCAAGTTCCTGCGCTAG
PROTEIN sequence
Length: 382
MHRRNFIAASAAAVAAPALGFMSSARAAESGVTDTEIVLGHTGILSGPLGAPIKVVVAGAGLAFDAVNAQGGLSGRKIRLVSLDDELVPEKAVANYEKLLGEHHAFAFFGCVGSGTTAAAAKVLNQSGAPMVGGYAVSDSAREKVAGSGYFVRATFAREAQALVQHLTTIGVSRIAVAYLDNPGGAEVAKLVEAALSTLQLKPVAAVPVKGDGSANEASGKALADSKAQAVIMYLGGGIGGEVMKSAWAAGGRQMFYGMSIVPGDVTAKLVGDKTSGLAISQIVPYPWSEVDAGAREYRQQAERAKVDVGYLSYEGYVNALVMIEALRRTGRDLTRAKLHATLKAMKLRVNNMEIDFTGASNTGSRFIEMVRVTKEGKFLR*