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cn_combo_scaffold_192_30

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: 37989..38960

Top 3 Functional Annotations

Value Algorithm Source
Candidate extracytoplasmic binding receptor n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y4L9_RAMTT similarity UNIREF
DB: UNIREF100
  • Identity: 74.8
  • Coverage: 322.0
  • Bit_score: 482
  • Evalue 4.70e-133
Variovorax paradoxus strain MEDvA23 contig_54, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27483.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona similarity UNIPROT
DB: UniProtKB
  • Identity: 90.1
  • Coverage: 323.0
  • Bit_score: 583
  • Evalue 1.60e-163
tctC; extracytoplasmic binding receptor similarity KEGG
DB: KEGG
  • Identity: 74.8
  • Coverage: 322.0
  • Bit_score: 482
  • Evalue 1.30e-133

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 972
ATGAAACGCCGTCAGTTCGCAGCGCGTGCCGCTGCCGCCCTTGCCGCCACGGCCGCCGCGCCGCTGGTGTTCGCGCAGCAGGACCGCACCGTGCGGATCCTGGTCGGCTTTCCGCCGGGCGGCTCGGTGGACGTGGTGGCGCGGGTGCTGGCCGAGAAGATGCGCGTGTCGCTGGGCCAGAACGTGATCATCGACAACAAGCCCGGCGCGGCCGGCCGGCTCGCGCTGGGCGAACTGCGGCGCGCGGCGCCGGACGGCCACACGCTGGCCTTCTCGCCGAGCGGCGCGATGGTGATCCACCCCTGGCTCTACCCCAACCTCGGCTACGACCCGGCAAAGGACTTCACCCCGATCGCGCTCGGCAGCACCTTCGACTTCGCGGTGACGGCGGGCCCCGGCGCGCCGCCCGGCGACCTGAAGACGGTGCTGGCATGGATGAAGGCCAACCCCGCCAAGGCCAACTACGCCACTTCGGGCGCGGGCACCGTGCCGCACTTCGCCGGCCAGTTGATCGCCCAGGCGGCCGGCGTGCCGATGACGCACGTGGCCTACCGCGGCGGCGCCCCGGCCGCGCAGGACCTGATCGGCGGGCAGGTGCCGCTGATGGTCGACACCGCCTCGGAAACCATCGAGCACCACCGAGCGGGCAAGGTGCGCATCCTCGCGGTGACGGGCGAGCAGCGCAGCCGCGCGCTGCCCGACGTGCCGACGCTGAAGGAGGCGGGCATCAACGTGACGGCCGATGCATTCTTCGGGCTCTATGGGCCGCCGGGCATGCAGCCCGAGCTGGTGGCGCGCATCGACAAGTCGGTGGCCGACGCGCTGCGCATGCCCGACGTGCAGGAAAAGATCTATTCGCTGGGGCTCGTGCCCGCGCATGCGGGGCCGGCCGAGCTCGCGGCCATACAGGCGGCGCATCTGAAGCGCTGGGAAATGCCGATCAAGAACTCGGGCTTCAAGGCAGAGTCCTGA
PROTEIN sequence
Length: 324
MKRRQFAARAAAALAATAAAPLVFAQQDRTVRILVGFPPGGSVDVVARVLAEKMRVSLGQNVIIDNKPGAAGRLALGELRRAAPDGHTLAFSPSGAMVIHPWLYPNLGYDPAKDFTPIALGSTFDFAVTAGPGAPPGDLKTVLAWMKANPAKANYATSGAGTVPHFAGQLIAQAAGVPMTHVAYRGGAPAAQDLIGGQVPLMVDTASETIEHHRAGKVRILAVTGEQRSRALPDVPTLKEAGINVTADAFFGLYGPPGMQPELVARIDKSVADALRMPDVQEKIYSLGLVPAHAGPAELAAIQAAHLKRWEMPIKNSGFKAES*