ggKbase home page

cn_combo_scaffold_1066_20

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: comp(19923..20867)

Top 3 Functional Annotations

Value Algorithm Source
LysR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000371B567 similarity UNIREF
DB: UNIREF100
  • Identity: 81.6
  • Coverage: 294.0
  • Bit_score: 479
  • Evalue 2.20e-132
Transcriptional regulator {ECO:0000313|EMBL:EJL79643.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF31 similarity UNIPROT
DB: UniProtKB
  • Identity: 77.7
  • Coverage: 309.0
  • Bit_score: 475
  • Evalue 4.60e-131
transcriptional regulator, LysR family similarity KEGG
DB: KEGG
  • Identity: 77.5
  • Coverage: 306.0
  • Bit_score: 463
  • Evalue 6.10e-128

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 945
ATGAACACGCCATCCATGCTCGACCTCAACGACATCGCCATGTTCGTGCAGGTGGTGCGCTACGGCAGCTTCGCCGAGGCGGCGCGCCGCCTGGGCGTGCCGCCGAACACGCTCAGCCGGCGCATCCAGCAGCTCGAATCGCAGCTGGGTACGCGGCTGATGCAGCGCTCCACGCGCAAGCTGACGCTGACCAGCGCGGGGCAGGATTTCCATGACCGGTGCGCGGGGGCGGTGGACGGGCTGGTGGCGGCCGGGCAGGAGTTGGTGGCTGGGGGGCAGGCGCCGAGTGGGCTGGTGCGGGTAGCGGCTACCGCAGACTTTTTTGACTTCTTTCCCATGGAGTGGGTCGCGGAGTTCTTGCGAACCCACCCGCTGGTTCGACTGGACTTCGTGCTCAGCGATGCAGTGGTCGATCTGATCGCGGAGAACATCGACATCGCCTTTCGCGGCGGCCCGCTGAGCGACTCCAGCTATGTTGCGCGTCGGCTTGTCACCCGCAGCGGTGGCTTGCTTGCGAGCCCCGCATACATCGCTGCTCGCGGCGCGCCCACGACCTTGCAGGATCTGGCGCACCACGATTGCGTAACGGCCGCCCATCCAAGCGGTCATGCCACATGGCGATTGACCGGTCCCGACGGTATGGAGGAAGAAGTTCAGGTCAAAGGCCGATTTACGGGCAATACCGCGCAAGCACTGCGCAAGGCCACGCTGGCCGGGCTTGGCGTCGCACTGCTCCCGCCCGCGATGGCGACGTCTGACGAGCAAGCCGGGTTGTTGGTGCCTGTCCTGCCGCAATACCAATACCAGGGCCGAGGGCTGAACGTGGTTTATCCGAGCCGCAAGCACCTGCCGCTCGCGGTGTCGGCCTTTATCGAACTGGTAATAGAGAAGTTGGAAGGCAACCCGGAGATCTTTCCAACCGCATTGCGGCCACACCAGTCCTAG
PROTEIN sequence
Length: 315
MNTPSMLDLNDIAMFVQVVRYGSFAEAARRLGVPPNTLSRRIQQLESQLGTRLMQRSTRKLTLTSAGQDFHDRCAGAVDGLVAAGQELVAGGQAPSGLVRVAATADFFDFFPMEWVAEFLRTHPLVRLDFVLSDAVVDLIAENIDIAFRGGPLSDSSYVARRLVTRSGGLLASPAYIAARGAPTTLQDLAHHDCVTAAHPSGHATWRLTGPDGMEEEVQVKGRFTGNTAQALRKATLAGLGVALLPPAMATSDEQAGLLVPVLPQYQYQGRGLNVVYPSRKHLPLAVSAFIELVIEKLEGNPEIFPTALRPHQS*