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cn_combo_scaffold_2785_11

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: 11291..11923

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Variovorax sp. CF313 RepID=J3CJS6_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 82.4
  • Coverage: 210.0
  • Bit_score: 334
  • Evalue 1.00e-88
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EJL72916.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source=" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.4
  • Coverage: 210.0
  • Bit_score: 334
  • Evalue 1.40e-88
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 73.8
  • Coverage: 210.0
  • Bit_score: 301
  • Evalue 1.60e-79

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Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 633
ATGCGCGACCTCGTTCAGGAACTGGTAGCTCACTATGCGGACTTGCGCCGGCAGTTGACTCGCGACCTGAGGGATCCCCACTACGCGGCCGACATCGCGCAGTCGAGCTTCGAGCGGGTGTTCGCACAGGCCACGAAGTCGCTCGGCGCGGCCCGCGGTACCGGCGCCGAAGTGGCGGCACCGGATGACGCGAAGGACGCCGGCAGCGGTATCGAATCGCCCCGCGCCCTGCTCTTTCGCGTGGCCCGCAACCTGTGCATCGACGATGCGCGCCGCCGCAAGGTGGCGCAGGAATGGGTCGGCACGCATGCCGCCATCGGCACGCACCTCGTGGCGCCGTCCAGCGAATTCATCCTGGCGCAGCAGCGTGTGCTGGCGCGGGTGGTCGAGACCATGGAAAAACTCCCGCCGCGGCGGCGCCAGGTGTTCCTGCTGTTTCGCGCCTACGGCCACACGCGCGCGGAGATCGCGCAGCAGTTGGACATCACCGAGATGGCCGTGGCCAAGCACCTGCTGCGCGCCACCATCGATTGCTCGCGGGTGTTCGCCGAGCTGCGCGCCGAGCTGATCGAGCCGCAGCACGTGCAGAACCACGCCGGCTTCGATACTGCGCTGGCCGAAGACTTCTCGTGA
PROTEIN sequence
Length: 211
MRDLVQELVAHYADLRRQLTRDLRDPHYAADIAQSSFERVFAQATKSLGAARGTGAEVAAPDDAKDAGSGIESPRALLFRVARNLCIDDARRRKVAQEWVGTHAAIGTHLVAPSSEFILAQQRVLARVVETMEKLPPRRRQVFLLFRAYGHTRAEIAQQLDITEMAVAKHLLRATIDCSRVFAELRAELIEPQHVQNHAGFDTALAEDFS*