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cn_combo_scaffold_6564_1

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: comp(1..1077)

Top 3 Functional Annotations

Value Algorithm Source
rpoC; DNA-directed RNA polymerase, subunit beta' RpoC (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 99.7
  • Coverage: 359.0
  • Bit_score: 719
  • Evalue 5.40e-205
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase similarity UNIPROT
DB: UniProtKB
  • Identity: 99.7
  • Coverage: 359.0
  • Bit_score: 719
  • Evalue 2.70e-204
DNA-directed RNA polymerase subunit beta' n=1 Tax=Variovorax paradoxus B4 RepID=T1X5J3_VARPD similarity UNIREF
DB: UNIREF100
  • Identity: 99.7
  • Coverage: 359.0
  • Bit_score: 719
  • Evalue 1.90e-204

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1077
ATGAAATCGCTACTCGACCTGTTCAAGCAATTCACGCCCGATGAGCATTTCGATGCCATCAAGATCGGCATGGCTTCGCCCGAGAAGATCCGTTCGTGGTCTTTCGGCGAGGTGAAGAAGCCCGAGACGATCAACTACCGCACGTTCAAGCCCGAGCGCGACGGCCTGTTCTGCGCCAAGATCTTCGGCCCCATCAAGGACTACGAGTGCCTGTGCGGCAAGTACAAGCGCTTGAAGCACCGCGGCGTGATCTGCGAGAAGTGCGGCGTTGAAGTCACGCAGACCAAGGTGCGTCGCGAGCGCATGGGTCACATCGACCTGGCCGCGCCCTGCGCCCACATCTGGTTCCTGAAGTCGCTGCCGTCGCGCCTGGGCCTCGTGCTCGACATGACGCTGCGCGACATCGAACGCGTGCTGTACTTCGAAGCCTACGTGATCACCGACCCCGGCATGACCCCGCTGAAGAAGTTCGGCATCATGTCCGAGGACGACTACGACGCGAAGCGCAAGGAATACGGCGACGAATTCATCGCCAAGATGGGCGCCGAAGGCATCAAGGACCTGCTCGAAGGCATCGAACTCGACAGCGAGATCGAACGCCTGCGCGGCGACCTGACCGGCTCCGAAGTCAAGGTCAAGAAGAACTCCAAGCGCCTGAAGGTGCTGGAAGCCTTCCGCAAGTCGGGCATCAAGCCCGAGTGGATGGTGCTCGACGTGCTGCCCGTGCTGCCGCCGGACCTGCGTCCGCTGGTGCCGCTGGACGGCGGCCGCTTCGCGACTTCCGACCTGAACGACCTGTATCGCCGCGTCATCAACCGCAATTCGCGTCTGCGCCGCCTGCTGGAGCTGAAGGCCCCGGAAATCATCGCGCGCAACGAAAAGCGGATGCTGCAGGAAGCTGTCGACTCGCTGCTGGACAACGGCCGCCGTGGCAAGGCCATGACGGGCGCCAACAAGCGCGCGCTGAAGTCGCTGGCGGACATGATCAAGGGCAAGAGCGGCCGCTTCCGCCAGAATCTGCTGGGCAAGCGCGTCGACTACTCGGGCCGTTCGGTCATCGTGGTGGGCCCGACGCTC
PROTEIN sequence
Length: 359
MKSLLDLFKQFTPDEHFDAIKIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAKIFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSLPSRLGLVLDMTLRDIERVLYFEAYVITDPGMTPLKKFGIMSEDDYDAKRKEYGDEFIAKMGAEGIKDLLEGIELDSEIERLRGDLTGSEVKVKKNSKRLKVLEAFRKSGIKPEWMVLDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEAVDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPTL