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cn_combo_scaffold_6564_2

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: comp(1099..5223)

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su similarity UNIPROT
DB: UniProtKB
  • Identity: 99.2
  • Coverage: 999.99
  • Bit_score: 2671
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta n=2 Tax=Bacteria RepID=J2TFY6_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 99.2
  • Coverage: 999.99
  • Bit_score: 2671
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta similarity KEGG
DB: KEGG
  • Identity: 98.9
  • Coverage: 999.99
  • Bit_score: 2668
  • Evalue 0.0

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Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 4125
ATGGCCCAATCGTCCGCGTACAGTTACACCGAACGCAAGCGCATCCGAAAAAGTTTCGGCAATCGCGACAGCGTCGTAGAAATCCCTTACCTGCTGCAGATGCAGAAAGACGCGTACACCGCGTTCCTGCAAGCCGGCATTCCCCCGAAGCAACGCACCGTCGAAGGCCTGCAGGCCGCGTTCGACGCCGCCTTCCCGATCGTCTCGCACAACGGTTTTGTCGAGATGAAGTTCCTCGAGTACAACCTCGCGAAACCCGCTTTCGACGTGCGCGAATGCCAGACCCGCGGTCTGACCTTCGCCTCGGCCGTGCGCGCCAAGGTCCAGCTGATCATCTATGACCGCGAGTCGTCGACCTCGCAGTCGAAGGTGGTCAAGGAAGTGAAGGAACAAGAGGTCTACATGGGCGAAGTGCCGCTCATGACGGACAAGGGTTCGTTCATCATCAACGGCACGGAACGCGTGATCGTTTCGCAGCTGCACCGTTCGCCGGGCGTGTTCTTCGAACACGACAAGGGCAAGACGCACAGCTCGGGCAAGCTGCTGTTCTCGGCCCGCGTGATTCCCTACCGCGGTTCGTGGCTCGACTTCGAATTCGATCCGAAGGACATGCTGTACTTCCGCGTGGACCGTCGCCGCAAGATGCCGGTCACGATCCTGCTGAAGGCCATCGGCCTGAACCCGGAATCGATCCTCGCGAACTTCTTCGTGAACGACAACTTCCGCCTGATGGACAGCGGCGCGCAAATGGAGTTCGTCTCCGAGCGCCTGCGCGGCGAAGTCGCGCGCTTCGACATCACCGACAAGTCGGGCAAGGTCGTGGTCGCCAAGGACAAGCGCGTCACCGCGCGCCACACGCGTGAACTCGAGCAGGGCGGCACCACGCACATCAGCGTGCCGGAAGACTTCCTGGTCGGCCGTGTCATCGCCCGCAACATCGTCGACGCCGACTCGGGCGAAATCCTGGCCAAGGCCAACGACGAGCTGACCGAAGCGCTGCTGAAGAAGCTGCGCACCGCCGGCGTTCAAGACGTTCAGGTGATCTACACCAACGAACTGGACCAGGGCGCGTACATCTCGCAAACGCTGCGCATCGACGAAACCGTCGACGAGTTCGCGGCGCGCGTGGCCATCTACCGCATGATGCGCCCCGGCGAGCCGCCGACGGAAGACGCAGTGCAAGCGCTGTTCCAGCGCCTGTTCTACAACCCGGACACGTACGACCTGTCGCGCGTCGGCCGCATGAAGTTCAACGCCAAGGTCGGCCGCGACGAATCGACCGGCCCGATGGTGCTGACCAACGAAGACATCCTGGCCGTGGTCAAGATCCTCGTTGACCTGCGCAACGGCAACGGCGAAGTCGACGACATCGACCACCTGGGCAACCGCCGCGTGCGTTGCGTCGGCGAACTGGCCGAGAACCAGTACCGCACCGGCCTGGCTCGTATCGAGAAGGCCGTGAAGGAACGTCTGGGCCAGGCGGAGCAAGAGCCGCTGATGCCGCACGACCTGATCAACAGCAAGCCGATCTCGGCCGCGCTGAAGGAATTCTTCGGCGCATCGCAGCTGTCGCAGTTCATGGACCAGACGAACCCGCTGTCCGAAATCACCCACAAGCGCCGCGTGTCGGCCCTTGGCCCGGGCGGTCTGACGCGCGAACGTGCAGGCTTCGAAGTGCGCGACGTGCACGTGACCCACTACGGCCGCGTGTGCCCGATCGAAACGCCTGAAGGCCCGAACATCGGTCTGATCAACTCGCTGGCCCTGTACGCCCGCCTGAACGAATACGGCTTCATCGAGACGCCGTACCGTCGCGTGGTCGACAGCAAGGTCACCAACGAGATCGACTACCTGTCGGCCATCGAAGAAGGCAAGTACGTCATCGCCCAGGCCAACGCGGCCCTGGACAAGGACGGCGTACTGACCGGCGACCTGGTCTCCGCGCGTGAAGCCGGCGAATCGATCCTGGTCGGCGCCGAACGCATCCAGTACATGGACGTGTCGCCCGCGCAGATCGTGTCGGTGGCCGCCTCGCTCGTGCCGTTCCTGGAGCACGACGATGCGAACCGCGCATTGATGGGCGCCAACATGCAGCGTCAGGCCGTGCCTGTGCTGCGCCCCGAAAAGCCGATGGTCGGTACCGGTATCGAGCGCGTCTCCGCGGTCGACTCGGGCACCGTGGTCACGGCCACCCGCGGCGGTATCGTCGACTACGTCGATGCGACCCGTGTCGTGGTGCGCGTGAACGACGCCGAAGCGGCTGCCGGTGAAGTCGGTGTGGACATCTACAACCTGATCAAGTATCAGCGTTCGAACCAGAACACCAACATCCACCAGCGCCCCATCGTCAAGCGCGGCGACAAGATCGCCAAGGGCGACGTGGTGGCCGACGGCGCATCGACCGACCTCGGCGAACTGGCTCTGGGCCAGAACATGCTGATCGCGTTCATGCCCTGGAATGGCTACAACTTCGAAGACTCGATCCTGATCTCGGAACGCGTCGTCGCCGAAGACCGCTACACCTCGATCCACATCGAGGAACTGGTGGTGATGGCTCGCGACACGAAGCTGGGCGCCGAAGAAATCACGCGCGACATCCCGAACCTGGCCGAGCAGCAGCTCAACCGCCTCGACGAATCCGGCATCATTTATGTCGGCGCCGAAGTGCAGCCGGGCGACACGCTGGTGGGCAAGGTCACGCCGAAGGGCGAGACCACGCTGACGCCTGAAGAGAAGCTGCTTCGCGCCATCTTCGGCGAGAAGGCTTCCGACGTGAAGGACACCTCGCTGCGTGTGGATCAGGGCTCGCAAGGCACCGTGATCGACGTGCAGGTGTTCACCCGCGAAGGCATCACGCGCGACAAGCGCGCCCAGCAGATCATCGACGACGAGCTCAAGCGCTTCCGCCTCGACCTGAACGACCAGCTTCGCATCGTCGAAGCCGACGCGTTCGACCGTATCGAGAAGCTGCTGACCGGCAAGGTCGCCAACGGCGGCCCGAACAAGCTGGCCAAGGGCACCAAGCTCGACAAGGCCTACCTGTCGTCGGTCGAGAAGTTCCACTGGTTCGACATCCGCCCGGCGGAAGACGAAGTGGCAACGCAGCTCGAGTCGATCAAGAACTCGCTGGAGCAGACGCGCCACAGCTTCGACCTCGCGTTCGAAGAAAAGCGCAAGAAGCTCACGCAGGGCGACGAGCTGCCCGCGGGCGTGCTCAAGATGGTCAAGGTCTACCTGGCCGTCAAGCGCCGTCTGCAACCCGGCGATAAGATGGCCGGCCGCCACGGCAACAAGGGTGTGGTGTCGAAGATCGTTCCGGTCGAAGACATGCCCCACATGGCCGACGGCACGCCGTGCGACATCTGCCTGAACCCGCTGGGCGTGCCCTCGCGGATGAACGTGGGCCAGGTTCTCGAAGTGCATCTGGGCTGGGCCGGCAAGGGCATCGGCCAGCGCATCGGCGACCTGCTGCAGCAAGAGGCCAAGGTGGCAGAGCTGCGCAAGTTCATGGAGCAGCTGTACAACGGCTCGGGCCGTCCGGAAGAACTCGAACAGCTGAGCGACACCGAACTGCTCGCCATGGCGGCCAACCTGCAAAGCGGCGCCACGTTCGCGACGCCGGTGTTCGACGGCGCCTCGGAAGAAGAAATCCGCGGCATGCTGAAGCTCGCCTACCCGGACGACATCGCCAAGCTCAAGGGCCTGACCGAAACGCGCACGCAGGCGTACCTGTTCGACGGCCGCACCGGCGACCAGTTCGAGCGTCCCGTCACCGTCGGCTACATGCACTTCCTGAAGCTGCATCACCTGGTCGACGACAAGATGCACGCGCGCTCGACCGGCCCGTACTCGCTCGTCACGCAGCAACCGCTGGGCGGCAAGGCGCAGTTCGGCGGCCAGCGTTTCGGTGAAATGGAAGTGTGGGCGCTGGAAGCTTACGGCGCCGCCTACGTCCTGCAGGAAATGCTGACCGTGAAGTCCGACGACGTGCAAGGCCGTACCAAGGTGTACGAAAGCATCGTCAAGGGCGAGCACTCGATCGAAGCCGGCATGCCGGAATCGTTCAACGTGCTGGTCAAGGAAATTCGTTCGCTGGGGCTCGACATCGAGCTCGAGCGTTCTTAA
PROTEIN sequence
Length: 1375
MAQSSAYSYTERKRIRKSFGNRDSVVEIPYLLQMQKDAYTAFLQAGIPPKQRTVEGLQAAFDAAFPIVSHNGFVEMKFLEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTSQSKVVKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARVIPYRGSWLDFEFDPKDMLYFRVDRRRKMPVTILLKAIGLNPESILANFFVNDNFRLMDSGAQMEFVSERLRGEVARFDITDKSGKVVVAKDKRVTARHTRELEQGGTTHISVPEDFLVGRVIARNIVDADSGEILAKANDELTEALLKKLRTAGVQDVQVIYTNELDQGAYISQTLRIDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAKVGRDESTGPMVLTNEDILAVVKILVDLRNGNGEVDDIDHLGNRRVRCVGELAENQYRTGLARIEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETPYRRVVDSKVTNEIDYLSAIEEGKYVIAQANAALDKDGVLTGDLVSAREAGESILVGAERIQYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKPMVGTGIERVSAVDSGTVVTATRGGIVDYVDATRVVVRVNDAEAAAGEVGVDIYNLIKYQRSNQNTNIHQRPIVKRGDKIAKGDVVADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVAEDRYTSIHIEELVVMARDTKLGAEEITRDIPNLAEQQLNRLDESGIIYVGAEVQPGDTLVGKVTPKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGITRDKRAQQIIDDELKRFRLDLNDQLRIVEADAFDRIEKLLTGKVANGGPNKLAKGTKLDKAYLSSVEKFHWFDIRPAEDEVATQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSKIVPVEDMPHMADGTPCDICLNPLGVPSRMNVGQVLEVHLGWAGKGIGQRIGDLLQQEAKVAELRKFMEQLYNGSGRPEELEQLSDTELLAMAANLQSGATFATPVFDGASEEEIRGMLKLAYPDDIAKLKGLTETRTQAYLFDGRTGDQFERPVTVGYMHFLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVLQEMLTVKSDDVQGRTKVYESIVKGEHSIEAGMPESFNVLVKEIRSLGLDIELERS*