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cn_combo_scaffold_1118_15

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: comp(17598..18359)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035C3E06 similarity UNIREF
DB: UNIREF100
  • Identity: 92.5
  • Coverage: 253.0
  • Bit_score: 463
  • Evalue 1.80e-127
type IV / VI secretion system, DotU similarity KEGG
DB: KEGG
  • Identity: 67.3
  • Coverage: 245.0
  • Bit_score: 339
  • Evalue 6.30e-91
Type IV / VI secretion system, DotU {ECO:0000313|EMBL:ADG19389.1}; TaxID=640511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkho similarity UNIPROT
DB: UniProtKB
  • Identity: 67.3
  • Coverage: 245.0
  • Bit_score: 339
  • Evalue 3.10e-90

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Taxonomy

Burkholderia sp. CCGE1002 → Burkholderia → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 762
ATGGCACGCACCCTCCCCGACCTTGCGGTCGACGACCACATCACCAAGCAGTTCCGCGCCTTCTACGACGAGATCGTGAAGGCCCGCGACCGCACCGCCGAATCGCGCGAGACCGACCCCGACCTGGTGGCGCAGGCGCTGGCCCGCCACCTGGAAAACCTGCTGGAGCTGCAGTCGCTCGAATCGCGCCGCGACAGCACCCGCTTCGAACTCGAGAACGTGGCCGACGCGCGCTACCTGAAGGCCGCGCTGGCCGACGAGATCCTGCTGCAAACGCCGTGGGTCGGGCGCGAGCGCTGGACCGCGCACCTGCTGGAGACTTCGCTCTTTCGCACCAACATCGCGGGCGACCTGGTGTTCAACCGCATCGAGGAGCTGCTGTCGGGCCGCGAGCCCTCCAAGCGCGACATTGCGCGGCTGTATCTCTTTGCGCTGGCGCTGGGCTTCCAGGGCAAGTACCGCGGCAACGGCGACACGGCCCGCCTGCTCGGCTACCGCGAGGAGCTGTTCCAGTTCGTCTACCAGCGTCCGGCCGACTTCTCGGGCCGCGACCGCGTGGTGTCGGAGCGGGCCTATGCCAGCACGCTCTCGCACATCGCGCCGCGCAAGCTGCCCACGCTGAGCCGCTGGACGGTGCTGTTCCTGCTGAGCGCCGCCACGCTGCTGGCGGTGTCGGAACTGCTGTGGCTGTGGCAATCGTGGCCGGTGCGGCAGGTGCTGCAGCCGGGCGCGGTCGATGCGTCGGGGGCCTGGCAGCGATGA
PROTEIN sequence
Length: 254
MARTLPDLAVDDHITKQFRAFYDEIVKARDRTAESRETDPDLVAQALARHLENLLELQSLESRRDSTRFELENVADARYLKAALADEILLQTPWVGRERWTAHLLETSLFRTNIAGDLVFNRIEELLSGREPSKRDIARLYLFALALGFQGKYRGNGDTARLLGYREELFQFVYQRPADFSGRDRVVSERAYASTLSHIAPRKLPTLSRWTVLFLLSAATLLAVSELLWLWQSWPVRQVLQPGAVDASGAWQR*