ggKbase home page

cn_combo_scaffold_1118_16

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: comp(18365..19687)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036FF4DB similarity UNIREF
DB: UNIREF100
  • Identity: 89.6
  • Coverage: 441.0
  • Bit_score: 782
  • Evalue 1.70e-223
type VI secretion protein similarity KEGG
DB: KEGG
  • Identity: 66.3
  • Coverage: 439.0
  • Bit_score: 580
  • Evalue 4.80e-163
Type VI secretion protein {ECO:0000313|EMBL:EIM98926.1}; TaxID=1171375 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia te similarity UNIPROT
DB: UniProtKB
  • Identity: 66.3
  • Coverage: 439.0
  • Bit_score: 580
  • Evalue 1.80e-162

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Burkholderia terrae → Burkholderia → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1323
GTGAACACAGTCCCCATCACCGACCGCGTCGAGTGGCATGAAGGCATGCTGCTGTCGCCGCAGCACTTCCAGCAGTTCTCGGCGCGCATGGATTCCCTCGTGGCCTGGCAGACGCTGGCCGCCGCACCCTTCAGCTGGGGCGTGCGCCGCCTGGTGTTCGACCACGGCCTGCTGCCCACCGGCATGCTGCGCGTGCTGGCGCTCGAAGCCATCCTGCCGGACGGCACCGCCGTGCAGTATTCGGCCGCCGAGGCCGCGCACGGCACGCTGGAGCTGTCGCTGGCGCCGCATGCCGATCAGTTGGCCAACGAGCCGCTCGACATCTACCTCACGCTGCCGGTCACCGGCCCCGCGCGGCATCGCGCCGCGACCGTGCGCTTTCGCTCGGTGGCCGGCGCGCCGGTGGAAGACGCGGTGTCCGACGCCGAGCCCGCGAACATCCCGCGCATGCTGCCGCGCCTGGCGCTCAGCGCGGGCGCCGTGCCGCCCGGCACGCATGTGCATCTGCGCCTGGGCCAGGTGTTCAAGGACAACGAGGTGGTCAAGCTCGGCGACGCGCAGCCGCCGCTGCTGGAAGTGGCGCGCGACAACCCGCTGTGGACGGCCGCGGCCGCCCTGCTGGGCCAGTTGCGCGGCAAGGCCGCCTTCGTGGCCAAGCAGACGGCCGTGCCCTCTTCTCGCGTGGACGACCGGCTGGCGCACCTGGAGCTGAAGGACCGGCTGCGCAGCCTGCTGTCGGGCCTGCCGCATGCCGAGGCCGTGCTGCGCACGCCGCACCTGCATCCGCTGCCGATGTACTGGTCGCTGTGCGCGCTGCTGGCCTCGCTGAGCCTGCTGCGGCCGGGCGGCCTGCCGCCGGTGCCGATGGACTACGACCATGCGAACCCGTCGCTCGTATTCCAGCCGCTGCTGCTGGCGCTGCGCGACGCGGTGTCCGAAGTGAGCCAGGAGTACCGCGAGCACAAGTTCGAGTTCCGCCAGGGCGCCTTCGAGACCACGCTGCAGCCGCAATGGCTGGCCGGCAAACGCATCGTGGTCGGCCTGCGGGGCCAGTCGGACAAGGACATCCAGGCCTGGATGAAGAGCGCCATCGTGGGCTCGCAGTCGGCCTACCGCTCGCTGCGCGAAGACCGCTGGCCGGGCGCGCAGCGCAACCCCATCGACTCGGCCGACGAGCTCGGCCTGCGCCCCGGTTCGGGCTACCTGCTCTACGAGATCCAGACCAGCGCCAAGCTGACCGTGCCCGGCGAGCTGCTGGTGATTGCCAACGAAGGCTCCACCGCGCTGCCTCCGCAGGAAATCGTGCTGTTCATCAAGGACTGA
PROTEIN sequence
Length: 441
VNTVPITDRVEWHEGMLLSPQHFQQFSARMDSLVAWQTLAAAPFSWGVRRLVFDHGLLPTGMLRVLALEAILPDGTAVQYSAAEAAHGTLELSLAPHADQLANEPLDIYLTLPVTGPARHRAATVRFRSVAGAPVEDAVSDAEPANIPRMLPRLALSAGAVPPGTHVHLRLGQVFKDNEVVKLGDAQPPLLEVARDNPLWTAAAALLGQLRGKAAFVAKQTAVPSSRVDDRLAHLELKDRLRSLLSGLPHAEAVLRTPHLHPLPMYWSLCALLASLSLLRPGGLPPVPMDYDHANPSLVFQPLLLALRDAVSEVSQEYREHKFEFRQGAFETTLQPQWLAGKRIVVGLRGQSDKDIQAWMKSAIVGSQSAYRSLREDRWPGAQRNPIDSADELGLRPGSGYLLYEIQTSAKLTVPGELLVIANEGSTALPPQEIVLFIKD*