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cn_combo_scaffold_1118_25

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: comp(26097..28037)

Top 3 Functional Annotations

Value Algorithm Source
type VI secretion protein Vgr n=1 Tax=Variovorax paradoxus RepID=UPI00037BEB3A similarity UNIREF
DB: UNIREF100
  • Identity: 83.7
  • Coverage: 646.0
  • Bit_score: 1096
  • Evalue 0.0
Type VI secretion system Vgr family protein {ECO:0000313|EMBL:ELX12955.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 50.4
  • Coverage: 665.0
  • Bit_score: 633
  • Evalue 4.60e-178
ImpA family type VI secretion-associated protein similarity KEGG
DB: KEGG
  • Identity: 50.5
  • Coverage: 645.0
  • Bit_score: 623
  • Evalue 9.50e-176

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Taxonomy

Janthinobacterium sp. HH01 → Janthinobacterium → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1941
ATGCGTGAAGGCTTCCTCCAGCACAACGCCTTCCTGACGGTGCAGACCGCGCTGGGTCCGGAAGACCTGCTGCTCGACACCTTCCAGGCAACCGAAGGGCTGTCGCGGCTGTTCGCCTGCTCGCTGACCATGCGCTCGCCCCTGGACACGATCAAGGGCGCCGACCTGATCGGCACCTCGGCCACCGTCACGCTGCAGCGGCCCGAGAAGAATGCGCGCCTGTTCAACGGGATCGTCTCGCGCTTCACCTACCTGGGCAGCAACCAGGACTTCGCGACCTACACGCTCGAGCTGGTGCCACGCATGTGGCTGCTCACGCTGGGCCGCGACCGGGTGATCTACCAGAACTTGAGCACGCCCGATATCGTGCAGAAGGTGCTCGGTGACTTCGCGGTGGATTGCCGCACGGCGCTGGAAGGCACCTATGCCCCGCGCGAGTACTGCGTGCGCTATGACGAGACGGCCTTCGACTTCGTCTCGCGCCTGATGGAAGAGGAAGGCATCTTCTATTTCTTCACCTTCACCGCCGACTCGCACACGCTGGTGCTGGCGGACAGCAAGTCGGCCTACGAGAGTTGCCCGAACGCGCAAGAGCTCCTCGTGCGCAGCGGCGAGGGAGGGGTTGGGCACACGCATTCGGTCACCCGCTTCGAGTCGGACGCCAGGCTGGTGACCAAGGACCACGAGGTGGACGACTACGACTTCCTCACGCCCGATACCAGCCTGCTCGCAAAGAACTCGGCCAAGGCCGGACGCGGCAGCGACTATGAATTTCCCTCGCGCGTCGCCGCATCGGCCGCCAGCGCGCGGGCGCGCATCCGCCAGGAAGAGCACCAGGTCGGCAGCCAGTCGGGACGCGGCGACAGCCATTGCCACTACCTGACGCCGGGCACCACCTTCAAGCTGAAAGAGCACCCACGCGCCGACTTGAACGACGAGTACGTGGTGCACAGCGTGCATCACCACGCCGAAAACGAGAACTACAGCAACAGCTTCGAGACCCTGCCGCTGAACACGCCCTTCCGCCCGCCGCGCCTGACACCGCGCCCTGTGGTGGCCGGCAGCCACACGGCGCGGGTGGTGGGGCCTTCCGGGCACGAGGTCTGGACCGACCAGCACGGTCGCATCAAGGTGCAGTTCCCGTGGGACCGCCTGGGCAAGAAAGACGACAAGAGCTCGTGCTGGATGCGCGTCTCGCAGATATGGGCCGGCGAGGGCTGGGGTGCGCTCTTCCTGCCGCGCATCGGGCAGGAAGTGGTCGTGAGCTATGTCGACGGCGACCCCGACCGGCCGCTGGTGTCGGGCAGCGTCTACAACGGCACGCACGTCACGCCGGTCGAGCTGCCGAGCGCTTCGTCGCAAAGCACGATCCGCTCGCGCTCGCTGCCGGGCGGCTCCGCGGGCAACGAGTTGCGCTTCGAGGACAAGAAAGACGCCGAAGAGCTCTACATGCATGCGCAGAAGGACATGCGCACCGAGATCGAGAACGACCTGACCACCAAGGTGATCGCCGGCAACGAGCTGCACACGGTCACCAAGGGCAATCGCACCGTCAAGGTCGACACGGGCAACGAGACCCACTCGGTCAAGGGCACGCGCGCGCTGGAAGTCACGGGCAACGAGACGCACGACAACAAGGCCAACTTCACGCAGACGGTCAGCGGCAACTACGAGCTCAAGGTTACGGGCAACCTGGTGATCGACGTGACGGGCACGCTGCTCATCAAGTCGGCCCAGACGCTGGACCTGAAGGCCGGCACCGACCTTGGCGCCAACGCCGGCATCAACTTCAAGGCCGAGGCCGGCGTGGCCCTGTCAGCCAAGGGCGGCGCCTCGCTGACGAACGAAGCGCCGTCGATCAGCAGCAAGGCTTCGGCCATGAACGCCGTCGAAGGCGGCGGCATGGTCACGCTCAAGGGCGGGCTGGTGAAGATCAATTGA
PROTEIN sequence
Length: 647
MREGFLQHNAFLTVQTALGPEDLLLDTFQATEGLSRLFACSLTMRSPLDTIKGADLIGTSATVTLQRPEKNARLFNGIVSRFTYLGSNQDFATYTLELVPRMWLLTLGRDRVIYQNLSTPDIVQKVLGDFAVDCRTALEGTYAPREYCVRYDETAFDFVSRLMEEEGIFYFFTFTADSHTLVLADSKSAYESCPNAQELLVRSGEGGVGHTHSVTRFESDARLVTKDHEVDDYDFLTPDTSLLAKNSAKAGRGSDYEFPSRVAASAASARARIRQEEHQVGSQSGRGDSHCHYLTPGTTFKLKEHPRADLNDEYVVHSVHHHAENENYSNSFETLPLNTPFRPPRLTPRPVVAGSHTARVVGPSGHEVWTDQHGRIKVQFPWDRLGKKDDKSSCWMRVSQIWAGEGWGALFLPRIGQEVVVSYVDGDPDRPLVSGSVYNGTHVTPVELPSASSQSTIRSRSLPGGSAGNELRFEDKKDAEELYMHAQKDMRTEIENDLTTKVIAGNELHTVTKGNRTVKVDTGNETHSVKGTRALEVTGNETHDNKANFTQTVSGNYELKVTGNLVIDVTGTLLIKSAQTLDLKAGTDLGANAGINFKAEAGVALSAKGGASLTNEAPSISSKASAMNAVEGGGMVTLKGGLVKIN*