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cn_combo_scaffold_1118_28

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: comp(31808..33619)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003734CAF similarity UNIREF
DB: UNIREF100
  • Identity: 90.5
  • Coverage: 603.0
  • Bit_score: 1111
  • Evalue 0.0
Type VI secretion protein, VC_A0110 family {ECO:0000313|EMBL:EUC20018.1}; TaxID=1144309 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source similarity UNIPROT
DB: UniProtKB
  • Identity: 68.7
  • Coverage: 598.0
  • Bit_score: 829
  • Evalue 2.40e-237
type VI secretion protein similarity KEGG
DB: KEGG
  • Identity: 67.6
  • Coverage: 605.0
  • Bit_score: 826
  • Evalue 6.90e-237

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Taxonomy

Burkholderia sp. BT03 → Burkholderia → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1812
GTGTCCGACATCCAGCACAGCGACCTGCTGCAGTACTACAAGCGCGAACTGTCCTACCTGCGAGGACAGGGGGCGGACTTCGCCCAGCGCTACCCCAAGGTCGCCTCCCGGCTCTCGCTGCACGGCGGCGAATCGCTGGACCCGCATACCGAGCGGCTGATCGAATCGGTCGCCTTTCTTTCGGCGCGCGTGCACCGAGACCTCGACCAGGAATTTCCCGACGTCGCCTACGCGCTGCTCGACAACCTCTGCCCGTCGCTGGTGCAGCCGCTGCCCTCGATGTCGGTGGCGCAGTTCACGCTCGACCCGACGCAGGGCAAGGTCACGGCCGGCTTTCGCGTGCCGCGCCACACCATGCTGAATGCGCGCACCGCGCATCCGCATTCCGCGCCGGGCCAGGCCCCGCAGTCGCGCGAATGCCGCTTCCGCACCGCCTGGGACACCGTGCTGTGGCCGCTGCGCGTCTCGCATGCCGCCATCGACACCGACGCCGTACTGCGGCTCACGCTCGAGTGCGACGCCGGCACCGACTTCGCCGAGCTCGAGATCGACAACCTGCGCATTCACCTGCAGGGCGACTGGATGCTCACCATGCCGCTGTACGACGCGCTGGTGGCGGGCGTGAAGTCGGTCGGCGTCATGCCCGAAGGCGGCGCGCTGCAGATGCTGCCGCCCGACGCATGGCGCGAGGTCGGCTTCGCCGAAGGCGAAGAGGTGCTGCCGCAGCCCGCCAACGCACAGCCCGCCTACGGCCTGCTGCAGGAGTACTTCGCGTTTCCGCGCAAGTTCCATTTCTTCGACCTGCATCACCTGCGCGCGCGCCTGGGCCGCGGGCAGCGCTGCGACCTGGTGTTCCAGCTCGACCGGCCCACGCGCGCGCTGCGGCACCTGGACGCCGAGAACTTCCAGCTCGGCTGCACGCCCATCGTCAACCTGTTCCCGCGCGTGAGCGAGCCGCTGGTGATGGACCAGCGCCACTACGAATACATGCTGGTGCCCGACCGCCAGCGCGACGCGACCACCGAAGTGCATTCCATCGTCTCGGTGATCGCCTCCGACCCGGACGCCGACAAGCCGGTGAACGTGCCGGGCTTCGCCGCGCTCGGCCATGTGGACGGCGCCCAGGGCGCGCAGGGTTCGCAGGGCGCCGTGTTCTGGGCCGCCCGGCGCGAGCCCTGCCTGCGCCAGAACATTCCGGGCACCGACGTCTTCCTGTCTTTCGTCGACCAGGGCAAGACGCACAGCCGGCCCGCGCAACCTGTGGTGTATGCGCACCTGCTGTGCACCAACCGCCGGCTGGCCGAGCAAGTGCCCGTGGGCGCGCGGCTGGTGGCCGAAGGCCCGTCGCAGCCCACCAGCGTGCGCTGCCTTTACGAGCCCACCGCACAGCGCGACCCGCCGCTGGGCAGCGAGACGCTGTGGCGGCTGGTGTCGCTGCTCACGCTCAACCACCAGTCGCTGGTGGACGGCTCCACCGGCCGCGAGCAGCTGCGCGAGATGCTGCTGCTGTTCGCCTCCGACAGCCGGCGCGACCACGCGCAGATCCGCGGCATCGCCGGGCTCTCGGCGCGCGGCGTCACCGCCCACGTGGGCACCGAGGCCTGGCGCGGCTACTGCCGCGGCACGCAGGTCACGCTCGAATTCGAGGACGACGCCTTCGTCGGCGGCTCCCCTCTCATGATGTCGGCCGTGCTCGCGCGGTTCTTCGCCATGTACACCTCGGTGAACTCCTTCGTGCGCCTGGTGGTGCGCGACGGCGACGAAGTGCGCAAGCAATGGGCGCCGATGACGGGCCGGCAGGTCGTGCTGTGA
PROTEIN sequence
Length: 604
VSDIQHSDLLQYYKRELSYLRGQGADFAQRYPKVASRLSLHGGESLDPHTERLIESVAFLSARVHRDLDQEFPDVAYALLDNLCPSLVQPLPSMSVAQFTLDPTQGKVTAGFRVPRHTMLNARTAHPHSAPGQAPQSRECRFRTAWDTVLWPLRVSHAAIDTDAVLRLTLECDAGTDFAELEIDNLRIHLQGDWMLTMPLYDALVAGVKSVGVMPEGGALQMLPPDAWREVGFAEGEEVLPQPANAQPAYGLLQEYFAFPRKFHFFDLHHLRARLGRGQRCDLVFQLDRPTRALRHLDAENFQLGCTPIVNLFPRVSEPLVMDQRHYEYMLVPDRQRDATTEVHSIVSVIASDPDADKPVNVPGFAALGHVDGAQGAQGSQGAVFWAARREPCLRQNIPGTDVFLSFVDQGKTHSRPAQPVVYAHLLCTNRRLAEQVPVGARLVAEGPSQPTSVRCLYEPTAQRDPPLGSETLWRLVSLLTLNHQSLVDGSTGREQLREMLLLFASDSRRDHAQIRGIAGLSARGVTAHVGTEAWRGYCRGTQVTLEFEDDAFVGGSPLMMSAVLARFFAMYTSVNSFVRLVVRDGDEVRKQWAPMTGRQVVL*