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cn_combo_scaffold_1635_18

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: comp(18241..18972)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037804E0 similarity UNIREF
DB: UNIREF100
  • Identity: 76.4
  • Coverage: 246.0
  • Bit_score: 360
  • Evalue 1.20e-96
two component transcriptional regulator, winged helix family similarity KEGG
DB: KEGG
  • Identity: 49.6
  • Coverage: 228.0
  • Bit_score: 222
  • Evalue 1.40e-55
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:AGU51780.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variov similarity UNIPROT
DB: UniProtKB
  • Identity: 49.6
  • Coverage: 228.0
  • Bit_score: 222
  • Evalue 7.00e-55

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 732
ATGAACATTACGAAAACCGACAGCAGTGAAAAAATAGTCGTCTACCTGATCGAAGACGAAGAAGACCTTCAGGAAGCGCTCGTATACAACCTCAACCAGATGGGCGTCGAAGCCCACGGGTTTTCGACGGCGTCGGCGTTTTACCGGGCCTATGCGGTCCGCCGCTGCGACATCGTGGTCATCGACATCGGGCTGCCGGACGAGAACGGTTTTTCAATTGCCCAGCACCTGCGCTCGGCCAGCAACGTGGGAATCGTGTTCGCAACCGCACGCCACGAACTCAGCGATCGGGTGCGCGGCCTGCGTGACGGCGCGGATGCCTACTTCGTGAAGCCGGTACACGCCGAAGAGCTTGCCGCGTCGCTGCAGGCCATCCATCGGCGCATCAAGGCCTCCGAGCGCGGTGCCCATCCTGCACAGCCGCAGTCTGAAGCGCCCAGGGGCACGGGACGCTGGGAGCTCAAGGAGGACGACTGGATCCTCTGCGATCCGGGCGACCGGATGCTGCGCCTGACCATGTCCGAGCGAGCCATCGTGGGGTGCCTGTTCAAGCGGCGGGACAAGCCTGTCGACCGTGTGGAGCTCGCGGTCGCGCTTGGCGGCGACCTCGAGCATTTCGACCTCCAGCGCGTGGACGTGGTGATCAGCCGGCTTCGGCGCAAGGCGCTCGCGGCGGGCATTTCACTGCCGCTGCACACTGTCAGAGGCACGGGCTATCGGTTTCGGGCCTGA
PROTEIN sequence
Length: 244
MNITKTDSSEKIVVYLIEDEEDLQEALVYNLNQMGVEAHGFSTASAFYRAYAVRRCDIVVIDIGLPDENGFSIAQHLRSASNVGIVFATARHELSDRVRGLRDGADAYFVKPVHAEELAASLQAIHRRIKASERGAHPAQPQSEAPRGTGRWELKEDDWILCDPGDRMLRLTMSERAIVGCLFKRRDKPVDRVELAVALGGDLEHFDLQRVDVVISRLRRKALAAGISLPLHTVRGTGYRFRA*