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cn_combo_scaffold_2945_7

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: 5975..6964

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator (Fragment) n=1 Tax=Acidovorax sp. CF316 RepID=J0UDD2_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 76.0
  • Coverage: 279.0
  • Bit_score: 431
  • Evalue 5.60e-118
Variovorax paradoxus strain MEDvA23 contig_80, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ22970.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona similarity UNIPROT
DB: UniProtKB
  • Identity: 74.0
  • Coverage: 319.0
  • Bit_score: 472
  • Evalue 5.30e-130
LysR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 64.9
  • Coverage: 322.0
  • Bit_score: 420
  • Evalue 6.20e-115

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 990
ATGCCGATCAACGAGTTGCGTTCCATTGCCACTTTTGTGAAGACGGCCGAACTCGGCAGCTTGCGGCAAGCCGCAGCCGCACAAGGCATGACACCGCAGGCGGCAAGCCAGGCGCTGGCCCAACTCGAGAAGCATCTGGGAGTGCGGTTGTTTCATCGCACGACCCGCCGAATGTCGCTGACGGATGAAGGCCGGCATTTCCTCGAGGCTGCGCAAGCGCCTTTGCTCGGTATGCAACGCGCGCTGGAAACGACGCGGCAAGCCAAGGACGGCATCGCGGGTCCGCTGCGTGTGGTGGGTCCCCTGTCGGTCTTCACGCCGGTGCTGTGGCCGCTGCTGGACACCTTCTGTCGCCGATACCCCGAAGTCCAGCCCGATGTGCAACTGGACGACCGCATCGGCAACTGGGTTGAAGACAGGGTCGACGTGGGATTTCGCATCGGCCCGTCGCCGATGGACGGCGTGATCGGGCGGCGGCTTTTCACCTTGCAACTCATCGTATGCGCGTCGCCTGCCTATCTTTCGCAGCACGGTGTGCCGGAGAGCCTCGGTGCCCTGTCCACTCACCGCTGCAGCGCCTTTCGCAACCCCGGAACAGGCCGCGTACTGCCGTGGTACGTCAAGAACGGAAACGAGCTGGTCGAGCATCAGGTCGTGCCCGCCCTTACCGTCAACGATGAGGCGCTGGAAACCGAAGCGGTGCTGGCGGGCCATGTGATCGGTTTGCTCACCAGCGTGGCGGCCGCGCCGCACATCCGTGCAGGGCGACTGGTTCCGCTGCTTCTCGAGCATGTCGCGGACAAGTCGGGGGTGTTCGTCTACTACGGAAACCGCACATCGTTGCCGGCCCGCGTCCGTGCGTTCATCGACGTCGCGATCGAACTGCTGGCCGACAACCCGGCTTACGTGCTCGGCGCCGATGAACTTGCCCACGCGCAAACGGCTTGGCGAAGTTCCCAGACCTTGGGCTTTGATTCGACAGGTTCCTGA
PROTEIN sequence
Length: 330
MPINELRSIATFVKTAELGSLRQAAAAQGMTPQAASQALAQLEKHLGVRLFHRTTRRMSLTDEGRHFLEAAQAPLLGMQRALETTRQAKDGIAGPLRVVGPLSVFTPVLWPLLDTFCRRYPEVQPDVQLDDRIGNWVEDRVDVGFRIGPSPMDGVIGRRLFTLQLIVCASPAYLSQHGVPESLGALSTHRCSAFRNPGTGRVLPWYVKNGNELVEHQVVPALTVNDEALETEAVLAGHVIGLLTSVAAAPHIRAGRLVPLLLEHVADKSGVFVYYGNRTSLPARVRAFIDVAIELLADNPAYVLGADELAHAQTAWRSSQTLGFDSTGS*