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cn_combo_scaffold_2019

Alias: RUB134_36

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_2019_1
unknown

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1..81
DNA (81bp) protein (27aa)

This feature has no annotations

cn_combo_scaffold_2019_2
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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78..623
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Uliginosibacterium gangwonense RepID=UPI00035EF4F9
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
hypothetical protein
cn_combo_scaffold_2019_3
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

620..1996
DNA (1377bp) protein (459aa)
hypothetical protein n=1 Tax=Uliginosibacterium gangwonense RepID=UPI00035CA6E7
hypothetical protein
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
cn_combo_scaffold_2019_4
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2164..3327
DNA (1164bp) protein (388aa)
Putative regulator of cell autolysis n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WNQ0_9BURK
Putative regulator of cell autolysis {ECO:0000313|EMBL:EHR72586.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;
histidine kinase family protein
cn_combo_scaffold_2019_5
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3324..4169
DNA (846bp) protein (282aa)
Response regulator of the LytR/AlgR family n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WNQ1_9BURK
response regulator receiver protein Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
response regulator LytTR
cn_combo_scaffold_2019_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4243..4824)
DNA (582bp) protein (194aa)
MarR family transcriptional regulator n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2KF09_9BURK
Variovorax paradoxus strain MEDvA23 contig_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33822.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
MarR family transcriptional regulator
cn_combo_scaffold_2019_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4853..6283
DNA (1431bp) protein (477aa)
aldehyde dehydrogenase n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F75D
Aldehyde Dehydrogenase {ECO:0000313|EMBL:KFC72223.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
aldehyde dehydrogenase
cn_combo_scaffold_2019_8
Pseudomonas resinovorans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6307..7671
DNA (1365bp) protein (455aa)
Putative aminotransferase n=1 Tax=Pseudomonas resinovorans NBRC 106553 RepID=S6BE81_PSERE
putative aminotransferase
Putative aminotransferase {ECO:0000313|EMBL:BAN47379.1}; TaxID=1245471 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas res
cn_combo_scaffold_2019_9
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7685..8464
DNA (780bp) protein (260aa)
ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, ATPase component-like protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VAN2_9RHOB
ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, ATPase component-like protein {ECO:0000313|EMBL:EAQ14973.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhod
ABC transporter ATP-binding protein
cn_combo_scaffold_2019_10
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8490..9479
DNA (990bp) protein (330aa)
ABC taurine transporter, periplasmic ligand binding protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VAN1_9RHOB
ABC taurine transporter, periplasmic ligand binding protein {ECO:0000313|EMBL:EAQ14972.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Marit
hypothetical protein
cn_combo_scaffold_2019_11
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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9514..10476
DNA (963bp) protein (321aa)
ABC taurine transporter, periplasmic ligand binding protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VAN1_9RHOB
ABC taurine transporter, periplasmic ligand binding protein {ECO:0000313|EMBL:EAQ14972.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Marit
hypothetical protein
cn_combo_scaffold_2019_12
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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10473..11318
DNA (846bp) protein (282aa)
Putative taurine ABC transport system permease protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VAN0_9RHOB
Putative taurine ABC transport system permease protein {ECO:0000313|EMBL:EAQ14971.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimiba
ABC transporter membrane protein
cn_combo_scaffold_2019_13
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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11333..12094
DNA (762bp) protein (254aa)
Putative ABC transporter membrane protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VAM9_9RHOB
Putative ABC transporter membrane protein {ECO:0000313|EMBL:EAQ14970.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" sourc
ABC transporter permease
cn_combo_scaffold_2019_14
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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12109..13236
DNA (1128bp) protein (376aa)
Histone deacetylase superfamily n=1 Tax=Pseudogulbenkiania ferrooxidans 2002 RepID=B9Z414_9NEIS
Histone deacetylase superfamily {ECO:0000313|EMBL:EEG08591.1}; TaxID=279714 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseud
acetoin utilization protein
cn_combo_scaffold_2019_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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13332..14627
DNA (1296bp) protein (432aa)
N-acetylgalactosamine-6-sulfatase (EC:3.1.6.4) Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
twin-arginine translocation pathway signal protein n=1 Tax=Curvibacter lanceolatus RepID=UPI0003707500
sulfatase
cn_combo_scaffold_2019_16
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14695..15885)
DNA (1191bp) protein (397aa)
PGAP1-like protein n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IPL0_ANADE
PGAP1-like
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
cn_combo_scaffold_2019_17
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15917..16702)
DNA (786bp) protein (262aa)
cAMP phosphodiesterase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LSM4_9BURK
cAMP phosphodiesterase {ECO:0000313|EMBL:EGJ11342.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC B
putative hydrolase
cn_combo_scaffold_2019_18
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16933..17580)
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LSM5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGJ11343.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC
FHA domain-containing protein rbh
cn_combo_scaffold_2019_19
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(17692..18552)
DNA (861bp) protein (287aa)
putative protein phosphatase 2C-type (EC:3.1.3.16)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HY96_RUBGI
Uncharacterized protein {ECO:0000313|EMBL:BAL97983.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 10
cn_combo_scaffold_2019_20
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18596..19426)
DNA (831bp) protein (277aa)
Putative serine/threonine protein kinase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LSM7_9BURK
Putative serine/threonine protein kinase {ECO:0000313|EMBL:EGJ11345.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatily
putative serine/threonine protein kinase
cn_combo_scaffold_2019_21
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(19471..20679)
DNA (1209bp) protein (403aa)
Integral membrane protein TerC n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYS1_VARPE
integral membrane protein terc Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
integral membrane protein terc
cn_combo_scaffold_2019_22
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20711..21604)
DNA (894bp) protein (298aa)
sucD; succinyl-CoA ligase[ADP-forming] subunit alpha SucD (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkho
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HNI7_RUBGI
cn_combo_scaffold_2019_23
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21621..22781)
DNA (1161bp) protein (387aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558};
sucC; succinyl-CoA ligase[ADP-forming] subunit bata SucC (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit beta n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LSN2_9BURK
cn_combo_scaffold_2019_24
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(22979..23503)
DNA (525bp) protein (175aa)
Regulatory protein RecX n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HYA5_RUBGI
recX; recombination regulator RecX
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rub
cn_combo_scaffold_2019_25
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(23527..24576)
DNA (1050bp) protein (350aa)
Protein RecA n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LSN5_9BURK
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=987059 species="Bacteria; Proteobac
recA; protein RecA
cn_combo_scaffold_2019_26
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24781..25452
DNA (672bp) protein (224aa)
Two component transcriptional regulator n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LSN6_9BURK
Two component transcriptional regulator {ECO:0000313|EMBL:EGJ11354.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyt
winged helix family two component transcriptional regulator
cn_combo_scaffold_2019_27
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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25524..26978
DNA (1455bp) protein (485aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" sourc
OmpR family two component system sensor histidine kinase (EC:2.7.13.3)
Putative transmembrane sensor histidine kinase transcription regulator protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LSN7_9BURK
cn_combo_scaffold_2019_28
unknown

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comp(26995..27069)
DNA (75bp) protein (25aa)

This feature has no annotations

Displaying 28 items

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