ggKbase home page

AMDSBAU_40_13

Organism: Sulfo_Unknown_Bin

partial RP 4 / 55 MC: 1 BSCG 5 / 51 ASCG 0 / 38
Location: comp(13990..14994)

Top 3 Functional Annotations

Value Algorithm Source
sigma 38 (RpoS) similarity KEGG
DB: KEGG
  • Identity: 46.7
  • Coverage: 319.0
  • Bit_score: 262
  • Evalue 1.70e-67
RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWU4_SYNWW (db=UNIREF evalue=2.1e-67 bit_score=261.9 identity=46.7 coverage=90.74626865671642) similarity UNIREF
DB: UNIREF
  • Identity: 46.0
  • Coverage: 90.0
  • Bit_score: 261
  • Evalue 2.00e+00
(db=HMMPfam db_id=PF00140 from=58 to=93 evalue=1.0e-08 interpro_id=IPR009042 interpro_description=RNA polymerase sigma-70 region 1.2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
  • Identity: 0.0
  • Coverage: 0.0
  • Bit_score: 0
  • Evalue 1.00e+00

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Syntrophomonas wolfei → Syntrophomonas → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 1005
GTGAATGGTGACATCGCGAAAGGAGGACTTGGCGTGAGCGCTCGTCGTCCCCAGAATTTTTCTCTGCCTTCCGTGTCGGATGATCGGCCTGAGGCCTGGTCTTCCGACACGTCTGATCGGCCATTTCCCGAATCGGACGGCCCTGCCGCGGTGACGGTTGATGCCGATGCTGATGGTTTGCAGCAATACTTCCGGGATATCTCTCAATATCCTTTGCTGGATCATGCCACGGTGGTGGCTCTGGCTCAACGCTGGGAACAGGGCGATGCGTCGGCCAAAGCCGCCTTAGTGGAGGGCAATCTGCGCCTGGTGGTGTCGATTGCTAAACGCTATGCCAATCGGGGCCTGCCGTTGTTGGATTTGATTCAAGAAGGCAACACCGGGTTGATGCATGCCGTGGACAAATACAATTATCGCAAGGGCTACCAGTTCAGCACCTACGCCACCTGGTGGATTCGGCAAGCGATTGGCCGGGCGGTGGCCGATCATGGCCGCGCCATCCGACTGCCGGTGCATATGCATGAAAAGGTGTCGCACTTGCACCGGACGGTGCACACGCTGCAACAGCAGCATGACACGGTCACTCCGGCAATGGTGGCGGAAGCTCTGGACGTGTCGGTCGCGGACGCCGAGCGTCTGATGCGCGTCGGGCAAACCCCGCTTTCGCTGGATATGCCGATGCAAGACGGGGTCGACACCCCGCTGGGCGCTTTTGTGGCGGATGCGCAGGCCGTGCCCCCGGACGAGTATGCGGTGGATCAATGGCTGCGGGCCCAGATGGAGGCAGCGTTAACGGCGTTGTCTCCCCGCGAGCAACAGATTTTGCGGAGCCGATTTGGTTGGAGCGACGCTACGCCGCAAACCTTGCAGGCGATTGCCGGCACCCTGGGTATTACTCGAGAGCGTGTGCGCCAGATTGAGGTGAAGGCTTTGCGGAAATTACGCCGGATGCCCGTGATTCAGCGTCTGCGTCATCATGAGAGCTCTTCTCTCCCGTCTTCTTAA
PROTEIN sequence
Length: 335
VNGDIAKGGLGVSARRPQNFSLPSVSDDRPEAWSSDTSDRPFPESDGPAAVTVDADADGLQQYFRDISQYPLLDHATVVALAQRWEQGDASAKAALVEGNLRLVVSIAKRYANRGLPLLDLIQEGNTGLMHAVDKYNYRKGYQFSTYATWWIRQAIGRAVADHGRAIRLPVHMHEKVSHLHRTVHTLQQQHDTVTPAMVAEALDVSVADAERLMRVGQTPLSLDMPMQDGVDTPLGAFVADAQAVPPDEYAVDQWLRAQMEAALTALSPREQQILRSRFGWSDATPQTLQAIAGTLGITRERVRQIEVKALRKLRRMPVIQRLRHHESSSLPSS*