| Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
|---|---|---|---|---|---|---|---|
| sigma 38 (RpoS) | similarity |
KEGG
DB: KEGG |
46.7 | 319.0 | 262 | 1.70e-67 | swo:Swol_1507 |
| RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=335541 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas.;" source="Syntrophomonas |
UNIPROT
DB: UniProtKB |
46.7 | 319.0 | 262 | 8.40e-67 | Q0AWU4_SYNWW | |
| RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWU4_SYNWW (db=UNIREF evalue=2.1e-67 bit_score=261.9 identity=46.7 coverage=90.74626865671642) | similarity |
UNIREF
DB: UNIREF |
46.0 | 90.0 | 261 | 2.00e+00 | swo:Swol_1507 |
| (db=HMMPfam db_id=PF00140 from=58 to=93 evalue=1.0e-08 interpro_id=IPR009042 interpro_description=RNA polymerase sigma-70 region 1.2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 1.00e+00 | swo:Swol_1507 |
| (db=HMMPfam db_id=PF04539 from=175 to=250 evalue=1.0e-10 interpro_id=IPR007624 interpro_description=RNA polymerase sigma-70 region 3 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 1.00e+00 | swo:Swol_1507 |
| (db=HMMPfam db_id=PF04542 from=96 to=165 evalue=1.4e-19 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 1.00e+00 | swo:Swol_1507 |
| no description (db=Gene3D db_id=G3DSA:1.10.601.10 from=49 to=165 evalue=1.7e-48) | iprscan |
interpro
DB: Gene3D |
0.0 | 0.0 | 0 | 1.00e+00 | swo:Swol_1507 |
| Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=169 to=242 evalue=2.6e-10 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct | iprscan |
interpro
DB: superfamily |
0.0 | 0.0 | 0 | 2.00e+00 | swo:Swol_1507 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=267 to=279 evalue=3.3e-26 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
0.0 | 0.0 | 0 | 3.00e+00 | swo:Swol_1507 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=303 to=314 evalue=3.3e-26 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
0.0 | 0.0 | 0 | 3.00e+00 | swo:Swol_1507 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=120 to=133 evalue=3.3e-26 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
0.0 | 0.0 | 0 | 3.00e+00 | swo:Swol_1507 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=288 to=303 evalue=3.3e-26 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
0.0 | 0.0 | 0 | 3.00e+00 | swo:Swol_1507 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=144 to=152 evalue=3.3e-26 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
0.0 | 0.0 | 0 | 3.00e+00 | swo:Swol_1507 |
| no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=249 to=327 evalue=4.2e-20 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
0.0 | 0.0 | 0 | 4.00e+00 | swo:Swol_1507 |
| (db=HMMPfam db_id=PF04545 from=263 to=316 evalue=8.9e-18 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 8.00e+00 | swo:Swol_1507 |
| sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=91 to=318 evalue=8.6e-31 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169 | iprscan |
interpro
DB: HMMTigr |
0.0 | 0.0 | 0 | 8.00e+00 | swo:Swol_1507 |
| Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=56 to=163 evalue=9.4e-45 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma fact | iprscan |
interpro
DB: superfamily |
0.0 | 0.0 | 0 | 9.00e+00 | swo:Swol_1507 |
| Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=225 to=329 evalue=9.3e-23 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct | iprscan |
interpro
DB: superfamily |
0.0 | 0.0 | 0 | 9.00e+00 | swo:Swol_1507 |
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